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[172952_s_at]

Description C37960_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C37960 /DEF=C.elegans cDNA clone yk483g4 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 98      6grp_total > 97      4grp_total > 24      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 80.1
(-3)
A 		93.7
(-1.4)
P 		113.6
(1.1)
P 		129.7
(3)
P 		50
B 44.5
(-3)
M 		72.8
(-0.9)
P 		89.6
(0.4)
P 		124
(3)
P 		80
C 73.6
(-0.9)
A 		54.6
(-3)
P 		108.8
(3)
P 		109
(3)
P 		54
avr 66.1
(-3) 		73.7
(-2.2) 		104
(1.1) 		120.9
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 713
1 2 3 4 5 6 range
A 19.4
(-3)
A 		62.5
(-2.6)
P 		115
(-2.2)
P 		227.1
(-1.3)
P 		499.9
(1)
P 		732.4
(3)
P 		713
B 49.4
(-3)
P 		69.3
(-2.8)
P 		81.6
(-2.7)
A 		236.7
(-1.2)
P 		482.9
(1.1)
P 		676.5
(3)
P 		627
C 78.9
(-3)
P 		93
(-2.8)
P 		100.8
(-2.8)
P 		93.5
(-2.8)
P 		476.5
(1.4)
P 		622.6
(3)
P 		544
avr 49.2
(-3) 		74.9
(-2.8) 		99.1
(-2.5) 		185.8
(-1.7) 		486.4
(1.2) 		677.2
(3) 		628
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 29.2
(2.7)
A 		20.3
(-2.3)
P 		29.7
(3)
P 		19
(-3)
P 		11
B 14.2
(-3)
M 		18
(-1.1)
P 		20.8
(0.2)
P 		26.4
(3)
P 		12
C 24.4
(-0.6)
A 		15.7
(-3)
P 		37.9
(3)
P 		18.4
(-2.3)
P 		22
avr 22.6
(-0.6) 		18
(-3) 		29.5
(3) 		21.3
(-1.3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 3.6
(-3)
A 		22.2
(-2.4)
P 		25
(-2.3)
P 		57.6
(-1.1)
P 		150.8
(2.1)
P 		178.3
(3)
P 		175
B 17.2
(-3)
P 		23.1
(-2.8)
P 		19.8
(-2.9)
A 		62.7
(-1.8)
P 		196.2
(1.6)
P 		252.3
(3)
P 		235
C 29.2
(-2.7)
P 		28.4
(-2.7)
P 		25.6
(-2.8)
P 		18.8
(-3)
P 		154.2
(1.3)
P 		208.4
(3)
P 		190
avr 16.7
(-3) 		24.6
(-2.8) 		23.5
(-2.8) 		46.4
(-2.1) 		167.1
(1.6) 		213
(3) 		196
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172952_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26410
Sequence Type Exemplar sequence
Representative Public ID C37960 NCBI
Target Description C37960_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C37960 /DEF=C.elegans cDNA clone yk483g4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073364(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073364 NCBI Caenorhabditis elegans C29A12.1 (C29A12.1) mRNA, complete cds. 11/11 A 
SNAP00000008261 ENSEMBL cdna:SNAP chromosome:CEL140:V:10815030:10815975:-1 11/11 None
GENEFINDER00000008269 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10815030:10815975:-1 11/11 None
C29A12.1 ENSEMBL cdna:known chromosome:CEL140:V:10814994:10815980:-1 gene:C29A12.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10815022-10815393(-) 91.67 91.67
Public Domain and Genome References
Gene Title
Ensembl C29A12.1
Entrez Gene 179501 Entrez gene
SwissProt Q18292 EMBL-EBI
WormBase CE05326 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98244 Hypothetical protein C29A12.1 [Caenorhabditis elegans] ref|NP_505765.1| C29A12.1 [Caenorhabditis elegans] 1.0E-134
blast CAE64900 Hypothetical protein CBG09715 [Caenorhabditis briggsae] 5.0E-27
Sequence
Target Sequence 
>C. ELEGANS:172952_S_AT
gagattttcaagagcaggctcgttcacaagctatgagagatcacgaagtttaccttgntt
atgcggaagccattaattntgtaaacgttacacctcatttcgaacattttgagacccctg
cggaagacatttctacaccctttgaatcgcccaatcttccgagaaaacgtcgctct

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATTTTCAAGAGCAGGCTCGTTC 170 395 13 Antisense
GAGCAGGCTCGTTCACAAGCTATGA 327 389 24 Antisense
GCTCGTTCACAAGCTATGAGAGATC 278 299 30 Antisense
ATGAGAGATCACGAAGTTTACCTTG 664 43 45 Antisense
AAACGTTACACCTCATTTCGAACAT 166 67 95 Antisense
TTTCGAACATTTTGAGACCCCTGCG 208 667 110 Antisense
TTGAGACCCCTGCGGAAGACATTTC 634 703 121 Antisense
TGCGGAAGACATTTCTACACCCTTT 114 579 131 Antisense
ACATTTCTACACCCTTTGAATCGCC 536 105 139 Antisense
TTTGAATCGCCCAATCTTCCGAGAA 573 663 153 Antisense
CAATCTTCCGAGAAAACGTCGCTCT 623 177 164 Antisense
Sequence Source Affymetrix Proprietary Database