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[172951_s_at]

Description C35893_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C35893 /DEF=C.elegans cDNA clone yk450c1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 08      4grp_highest_8_8 > 56      4grp_high_8_8 > 34      6grp_highest_nonorm > 51      6grp_total > 04      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 374
1 2 3 4 range
A 748.1
(3)
P 		563.3
(-0.6)
P 		441.3
(-3)
P 		529.8
(-1.3)
P 		307
B 733.4
(3)
P 		731.2
(3)
P 		455.2
(-3)
P 		544.8
(-1.1)
P 		278
C 815.1
(3)
P 		719.7
(1.2)
P 		494.7
(-3)
P 		617.6
(-0.7)
P 		320
avr 765.5
(3) 		671.4
(1.1) 		463.7
(-3) 		564.1
(-1) 		302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 490
1 2 3 4 5 6 range
A 712.3
(3)
P 		660.7
(2.2)
P 		490.8
(-0.5)
P 		530.4
(0.2)
P 		474.5
(-0.7)
P 		327.8
(-3)
P 		385
B 757.3
(3)
P 		504.3
(-0.9)
P 		385.4
(-2.7)
P 		582.7
(0.3)
P 		531.2
(-0.4)
P 		363.9
(-3)
P 		393
C 817.8
(3)
P 		619.9
(0.5)
P 		544.6
(-0.5)
P 		525.3
(-0.8)
P 		699.1
(1.5)
P 		350.5
(-3)
P 		467
avr 762.5
(3) 		595
(0.6) 		473.6
(-1.2) 		546.1
(-0.1) 		568.3
(0.2) 		347.4
(-3) 		415
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 272.4
(3)
P 		122.3
(-1.6)
P 		115.4
(-1.8)
P 		77.5
(-3)
P 		195
B 233.9
(3)
P 		180.6
(0.5)
P 		105.5
(-3)
P 		116.1
(-2.5)
P 		128
C 269.8
(3)
P 		206.9
(0.7)
P 		172.4
(-0.5)
P 		104.1
(-3)
P 		166
avr 258.7
(3) 		169.9
(-0.3) 		131.1
(-1.8) 		99.2
(-3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 131.3
(-1)
P 		235
(3)
P 		106.9
(-2)
P 		134.5
(-0.9)
P 		143.2
(-0.5)
P 		79.8
(-3)
P 		155
B 263.5
(3)
P 		167.9
(-0.4)
P 		93.6
(-3)
P 		154.4
(-0.9)
P 		215.8
(1.3)
P 		135.7
(-1.5)
P 		170
C 303.1
(3)
P 		189.2
(-0.5)
P 		138.6
(-2)
P 		105.6
(-3)
P 		226.2
(0.7)
P 		117.3
(-2.6)
P 		198
avr 232.6
(3) 		197.4
(1.3) 		113
(-2.9) 		131.5
(-2) 		195.1
(1.2) 		110.9
(-3) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172951_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26375
Sequence Type Exemplar sequence
Representative Public ID C35893 NCBI
Target Description C35893_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C35893 /DEF=C.elegans cDNA clone yk450c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070994(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070994 NCBI Caenorhabditis elegans C39F7.2 (C39F7.2) mRNA, complete cds. 11/11 A 
GENEFINDER00000004837 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1223876:1235264:-1 11/11 None
C39F7.2.2 ENSEMBL cdna:known chromosome:CEL140:V:1223738:1235276:-1 gene:C39F7.2 11/11 None
C39F7.2.1 ENSEMBL cdna:known chromosome:CEL140:V:1223738:1235275:-1 gene:C39F7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1223809-1224945(-) 96.67 96.67
Public Domain and Genome References
Gene Title
Ensembl C39F7.2
Entrez Gene 178619 Entrez gene
SwissProt Q9UAQ3 EMBL-EBI
WormBase CE27581 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.22524.1.S1_AT similar to Tripartite motif protein 9 cfa
CANINE_2:CFAAFFX.22527.1.S1_S_AT similar to Tripartite motif protein 9 cfa
DROSOPHILA_2:1625935_AT dm
DROSGENOME1:146171_AT dm
DROSGENOME1:146168_AT dm
MG-U74CV2:167729_AT tripartite motif protein 9 mm
MOE430B:1434595_AT tripartite motif protein 9 mm
MOUSE430_2:1434595_AT tripartite motif protein 9 mm
MOE430B:1443989_AT tripartite motif protein 9 mm
MOUSE430_2:1443989_AT tripartite motif protein 9 mm
RAE230A:1387486_AT tripartite motif-containing 9 rn
RAT230_2:1387486_AT tripartite motif-containing 9 rn
RAE230B:1385140_AT tripartite motif-containing 9 rn
RAT230_2:1385140_AT tripartite motif-containing 9 rn
RAE230B:1383861_AT Tripartite motif-containing 9 rn
RAT230_2:1383861_AT Tripartite motif-containing 9 rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69216 Hypothetical protein C39F7.2 [Caenorhabditis elegans] ref|NP_503395.1| C39F7.2 [Caenorhabditis elegans] 0.0
blast CAE58012 Hypothetical protein CBG01082 [Caenorhabditis briggsae] 0.0
blast AAF52977 CG31721-PA [Drosophila melanogaster] gb|AAP51207.1| tripartite motif protein 9 [Drosophila melanogaster] ref|NP_723600.2| CG31721-PA [Drosophila melanogaster] gb|AAO39531.1| RE22018p [Drosophila melanogaster] 1.0E-144
blast AAF52977 CG31721-PA [Drosophila melanogaster] gb|AAP51207.1| tripartite motif protein 9 [Drosophila melanogaster] ref|NP_723600.2| CG31721-PA [Drosophila melanogaster] gb|AAO39531.1| RE22018p [Drosophila melanogaster] 1.0E-141
Protein Domains
Database ID Description E-Value
Pfam IPR000315 EMBL-EBI Zn-finger, B-box 9.4E-7
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 1.1E-23
Pfam IPR001841 EMBL-EBI Zn-finger, RING 8.9E-6
Pfam IPR003877 EMBL-EBI SPla/RYanodine receptor SPRY 1.1E-23
Sequence
Target Sequence 
>C. ELEGANS:172951_S_AT
gttattggagttaggttggattgtgaccgcggcaccatggagtacaccgttaacgacaga
aaacgaatttatcaagacgattcgatggctttcacaaacatgccacgtggcntntantac
cccgcgttctccgtcaatgccaactcatctattacagtacacacgggcctc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATTGGAGTTAGGTTGGATTGTG 52 447 58 Antisense
TTAGGTTGGATTGTGACCGCGGCAC 270 669 68 Antisense
GGCACCATGGAGTACACCGTTAACG 461 535 88 Antisense
TGGAGTACACCGTTAACGACAGAAA 708 515 95 Antisense
GACAGAAAACGAATTTATCAAGACG 465 365 112 Antisense
ATCAAGACGATTCGATGGCTTTCAC 309 27 128 Antisense
GACGATTCGATGGCTTTCACAAACA 576 377 133 Antisense
GGCTTTCACAAACATGCCACGTGGC 707 531 144 Antisense
TCCGTCAATGCCAACTCATCTATTA 143 595 187 Antisense
TGCCAACTCATCTATTACAGTACAC 402 587 195 Antisense
ATCTATTACAGTACACACGGGCCTC 427 31 204 Antisense
Sequence Source Affymetrix Proprietary Database