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[172950_at]

Description C51491_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C51491 /DEF=C.elegans cDNA clone yk208a5 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 49      4grp_high_8_8 > 60      6grp_total > 29      4grp_total > 59      6grp_high1_sub > Cu      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 65.3
(-0.6)
P 		64.2
(-0.7)
P 		119.8
(3)
P 		29.1
(-3)
A 		91
B 94.5
(3)
P 		90.5
(2.6)
P 		86
(2.1)
P 		36.8
(-3)
P 		58
C 71.8
(-0.3)
P 		116.7
(3)
P 		86.9
(0.8)
P 		34.1
(-3)
P 		83
avr 77.2
(1.1) 		90.5
(2.3) 		97.6
(3) 		33.3
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 61.4
(-1.4)
P 		49.5
(-3)
P 		76.9
(0.7)
P 		56.6
(-2.1)
P 		94.4
(3)
P 		69
(-0.4)
P 		45
B 79
(1.9)
P 		86.3
(3)
P 		48.4
(-2.8)
P 		62
(-0.7)
P 		47.4
(-3)
P 		83.1
(2.5)
P 		39
C 79.3
(3)
P 		54.9
(-0.1)
P 		34.5
(-2.7)
M 		72.7
(2.2)
P 		68.8
(1.7)
P 		32.5
(-3)
A 		47
avr 73.2
(3) 		63.6
(0.1) 		53.3
(-3) 		63.8
(0.2) 		70.2
(2.1) 		61.5
(-0.5) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 23.8
(1.3)
P 		13.9
(-0.9)
P 		31.3
(3)
P 		4.3
(-3)
A 		27
B 30.1
(3)
P 		22.3
(0.9)
P 		19.9
(0.3)
P 		7.8
(-3)
P 		22
C 23.8
(0.9)
P 		33.6
(3)
P 		30.3
(2.3)
P 		5.8
(-3)
P 		28
avr 25.9
(2.6) 		23.3
(1.9) 		27.2
(3) 		6
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 11.3
(-3)
P 		17.6
(-0.8)
P 		16.8
(-1.1)
P 		14.4
(-1.9)
P 		28.5
(3)
P 		16.8
(-1.1)
P 		17
B 27.5
(1.9)
P 		28.7
(2.3)
P 		11.8
(-3)
P 		16.4
(-1.6)
P 		19.3
(-0.7)
P 		31
(3)
P 		19
C 29.4
(3)
P 		16.8
(-0.7)
P 		8.8
(-3)
M 		14.6
(-1.3)
P 		22.3
(0.9)
P 		10.9
(-2.4)
A 		21
avr 22.7
(2.6) 		21
(1.7) 		12.5
(-3) 		15.1
(-1.6) 		23.4
(3) 		19.6
(0.9) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172950_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26434
Sequence Type Exemplar sequence
Representative Public ID C51491 NCBI
Target Description C51491_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C51491 /DEF=C.elegans cDNA clone yk208a5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C51491
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C51491 C51491_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C51491 /DEF=C.elegans cDNA clone yk208a5 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062376 4/11 Cross Hyb Matching Probes None
ZK430.8 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4404476-4404706(+) 75.67 75.67
Sequence
Target Sequence 
>C. ELEGANS:172950_AT
ttgctcaatattatctctaactttctctctcgcaaatcacattcctcattcagattatag
tcagttgtttcccttccctcgtcacgtttgtatgtatgttnngatngccatagctcacaa
tngttccatcattttttcattcttttttgaaacactattccctag

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTCAATATTATCTCTAACTTTC 161 703 59 Antisense
AATATTATCTCTAACTTTCTCTCTC 124 175 65 Antisense
TCGCAAATCACATTCCTCATTCAGA 115 601 88 Antisense
GCAAATCACATTCCTCATTCAGATT 39 319 90 Antisense
TCACATTCCTCATTCAGATTATAGT 459 627 95 Antisense
CATTCCTCATTCAGATTATAGTCAG 472 217 98 Antisense
GATTATAGTCAGTTGTTTCCCTTCC 533 427 111 Antisense
CTTCCCTCGTCACGTTTGTATGTAT 645 219 131 Antisense
CCCTCGTCACGTTTGTATGTATGTT 381 259 134 Antisense
TCATTCTTTTTTGAAACACTATTCC 24 619 195 Antisense
TCTTTTTTGAAACACTATTCCCTAG 416 303 199 Antisense
Sequence Source Affymetrix Proprietary Database