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[172948_at]

Description CEC701_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C07701 /DEF=C.elegans cDNA clone yk157b1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 90      6grp_total > 89      4grp_total > 52      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 130.5
(-3)
P 		189.4
(3)
P 		139.9
(-2)
P 		133.6
(-2.7)
P 		59
B 182.5
(3)
P 		100.4
(-3)
P 		132.3
(-0.7)
P 		110.8
(-2.2)
P 		82
C 136.3
(-0.4)
P 		174.4
(3)
P 		171.4
(2.7)
P 		106.8
(-3)
P 		68
avr 149.8
(2.2) 		154.7
(3) 		147.9
(1.9) 		117.1
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 121.1
(-1.4)
P 		118.9
(-1.5)
P 		171.5
(1)
P 		88.2
(-3)
P 		158.3
(0.4)
P 		211.8
(3)
P 		124
B 143.9
(-0.1)
P 		154.3
(0.5)
P 		100
(-3)
P 		113.3
(-2.1)
P 		163.5
(1.1)
P 		192.1
(3)
P 		92
C 181.8
(0.3)
P 		114.1
(-3)
P 		114.8
(-3)
P 		137.6
(-1.8)
P 		200.5
(1.3)
P 		235.9
(3)
P 		122
avr 148.9
(-0.9) 		129.1
(-2) 		128.8
(-2.1) 		113
(-3) 		174.1
(0.7) 		213.3
(3) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 47.5
(3)
P 		41.1
(1.6)
P 		36.6
(0.7)
P 		19.6
(-3)
P 		28
B 58.2
(3)
P 		24.8
(-2.8)
P 		30.7
(-1.8)
P 		23.6
(-3)
P 		35
C 45.1
(0.9)
P 		50.2
(1.6)
P 		59.8
(3)
P 		18
(-3)
P 		42
avr 50.3
(3) 		38.7
(0.7) 		42.4
(1.4) 		20.4
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 22.3
(-3)
P 		42.3
(1.1)
P 		37.4
(0.1)
P 		22.4
(-3)
P 		47.8
(2.2)
P 		51.6
(3)
P 		29
B 50.1
(0.3)
P 		51.3
(0.4)
P 		24.3
(-3)
P 		30
(-2.3)
P 		66.4
(2.3)
P 		71.6
(3)
P 		47
C 67.4
(1.6)
P 		34.8
(-2.2)
P 		29.2
(-2.8)
P 		27.7
(-3)
P 		64.9
(1.4)
P 		79
(3)
P 		51
avr 46.6
(-0.1) 		42.8
(-0.6) 		30.3
(-2.5) 		26.7
(-3) 		59.7
(1.9) 		67.4
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172948_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27271
Sequence Type Exemplar sequence
Representative Public ID CEC701 NCBI
Target Description CEC701_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C07701 /DEF=C.elegans cDNA clone yk157b1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065020(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065020 NCBI Caenorhabditis elegans Y67D2.7 (Y67D2.7) mRNA, complete cds. 9/11 None
Y67D2.7 ENSEMBL cdna:known chromosome:CEL140:III:1555385:1562224:-1 gene:Y67D2.7 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000002897 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1555803-1556102(-) 99.0 99.0
Public Domain and Genome References
Gene Title
Ensembl Y67D2.7
Entrez Gene 175309 Entrez gene
SwissProt Q9BKQ7 EMBL-EBI
WormBase CE39062 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_497421 Y67D2.7 [Caenorhabditis elegans] 0.0
blast AAK27884 Hypothetical protein Y67D2.7 [Caenorhabditis elegans] 1.0E-132
blast CAE69186 Hypothetical protein CBG15220 [Caenorhabditis briggsae] 7.0E-63
Sequence
Target Sequence 
>C. ELEGANS:172948_AT
caccaccggagatcgaagtgaatccagcgattgcaacacgatttgagcatgcttttcgtc
acaaagccctcgganccgatctaaatcaacaaattcaaggcaatcagcagtacaataatc
cgatgagctacacaacattncatcgatgcgttcgaaattgtcgaaaaaggcacgaatttc
gcgaaaaatatcttcgatccgcacgtttttcccgataattgcttttatgatgcgatc

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCACCGGAGATCGAAGTGAATCC 176 201 13 Antisense
GAAGTGAATCCAGCGATTGCAACAC 626 335 27 Antisense
CCAGCGATTGCAACACGATTTGAGC 76 273 36 Antisense
CGATTTGAGCATGCTTTTCGTCACA 120 249 51 Antisense
TGCTTTTCGTCACAAAGCCCTCGGA 219 427 62 Antisense
AGGCAATCAGCAGTACAATAATCCG 663 53 110 Antisense
CAATAATCCGATGAGCTACACAACA 385 179 125 Antisense
CATCGATGCGTTCGAAATTGTCGAA 49 213 153 Antisense
AAATATCTTCGATCCGCACGTTTTT 51 115 198 Antisense
TCCGCACGTTTTTCCCGATAATTGC 108 589 210 Antisense
CGATAATTGCTTTTATGATGCGATC 416 249 225 Antisense
Sequence Source Affymetrix Proprietary Database