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[172947_at]

Description CEC660_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C07660 /DEF=C.elegans cDNA clone yk156f8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 40      6grp_total > 19      4grp_total > 57      6grp_cgc > 02      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 561
1 2 3 4 range
A 655.2
(-2.1)
P 		1074
(2.8)
P 		1093.2
(3)
P 		579.4
(-3)
P 		514
B 737.9
(-0.5)
P 		862.1
(1.5)
P 		953.5
(3)
P 		588.4
(-3)
P 		365
C 589.9
(-2.3)
P 		935.8
(1.6)
P 		1060.2
(3)
P 		532.4
(-3)
P 		528
avr 661
(-1.8) 		957.3
(2) 		1035.6
(3) 		566.7
(-3) 		469

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 639
1 2 3 4 5 6 range
A 747.2
(3)
P 		696.9
(2.1)
P 		565.6
(-0.2)
P 		589.6
(0.2)
P 		609.9
(0.5)
P 		411.8
(-3)
P 		335
B 641.4
(2.3)
P 		624
(2)
P 		300.8
(-3)
P 		624.2
(2)
P 		688.5
(3)
P 		458.1
(-0.6)
P 		388
C 939.7
(3)
P 		506.6
(-1.9)
P 		556.9
(-1.3)
P 		622.4
(-0.6)
P 		785.5
(1.3)
P 		406.8
(-3)
P 		533
avr 776.1
(3) 		609.2
(0.1) 		474.4
(-2.2) 		612.1
(0.2) 		694.6
(1.6) 		425.6
(-3) 		351
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 238.6
(1.6)
P 		233.1
(1.4)
P 		285.8
(3)
P 		84.8
(-3)
P 		201
B 235.3
(3)
P 		212.9
(1.8)
P 		221
(2.2)
P 		125.4
(-3)
P 		110
C 195.3
(-0.7)
P 		269.1
(0.8)
P 		369.5
(3)
P 		89.8
(-3)
P 		280
avr 223.1
(0.8) 		238.4
(1.3) 		292.1
(3) 		100
(-3) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 137.7
(-1.5)
P 		247.9
(3)
P 		123.2
(-2.1)
P 		149.5
(-1)
P 		184.1
(0.4)
P 		100.3
(-3)
P 		148
B 223.2
(1.4)
P 		207.7
(0.9)
P 		73
(-3)
P 		165.3
(-0.3)
P 		279.7
(3)
P 		170.8
(-0.2)
P 		207
C 348.3
(3)
P 		154.6
(-2.2)
P 		141.7
(-2.6)
P 		125.2
(-3)
P 		254.2
(0.5)
P 		136.2
(-2.7)
P 		223
avr 236.4
(2.9) 		203.4
(1.3) 		112.6
(-3) 		146.7
(-1.4) 		239.3
(3) 		135.8
(-1.9) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 172947_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.27261
Sequence Type Exemplar sequence
Representative Public ID CEC660 NCBI
Target Description CEC660_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C07660 /DEF=C.elegans cDNA clone yk156f8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEC660
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEC660 CEC660_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C07660 /DEF=C.elegans cDNA clone yk156f8 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076377 5/11 Cross Hyb Matching Probes None
C07A12.4a.1 5/11 Cross Hyb Matching Probes A 
C07A12.4a.2 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4526127-4526402(+) 89.0 89.0
Sequence
Target Sequence 
>C. ELEGANS:172947_AT
gagctctaaatccacattccaatacagttcnacgcatcggggttccatgganctgttgtt
aaatgtcacacatcgttaacttattcatttttacttctctttccccctttctcacaacga
ctcttgtcagcatatcatctcatctttactaataagacgattatcggttttgattacgat
gttgtcagttaagatggtat

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTCTAAATCCACATTCCAATAC 440 387 52 Antisense
CTCTAAATCCACATTCCAATACAGT 27 231 55 Antisense
CTGTTGTTAAATGTCACACATCGTT 180 237 104 Antisense
GTCACACATCGTTAACTTATTCATT 167 465 116 Antisense
TAACTTATTCATTTTTACTTCTCTT 590 637 128 Antisense
CCTTTCTCACAACGACTCTTGTCAG 233 269 157 Antisense
ACGACTCTTGTCAGCATATCATCTC 362 93 168 Antisense
GTCAGCATATCATCTCATCTTTACT 353 465 177 Antisense
GCATATCATCTCATCTTTACTAATA 218 309 181 Antisense
CGGTTTTGATTACGATGTTGTCAGT 86 245 216 Antisense
ACGATGTTGTCAGTTAAGATGGTAT 474 93 227 Antisense
Sequence Source Affymetrix Proprietary Database