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[172945_s_at]

Description C30225_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C30225 /DEF=C.elegans cDNA clone yk230d6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 54      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 81      6grp_total > 55      4grp_total > 12      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 936
1 2 3 4 range
A 366
(-0.7)
P 		197.5
(-2.3)
P 		125.7
(-3)
P 		753.7
(3)
P 		628
B 409
(-1)
P 		161.1
(-2.6)
P 		106.6
(-3)
P 		1021.9
(3)
P 		915
C 427.8
(-0.2)
P 		149.4
(-2.5)
P 		85.6
(-3)
P 		813.3
(3)
P 		728
avr 400.9
(-0.7) 		169.3
(-2.5) 		106
(-3) 		863
(3) 		757

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 244
(-3)
P 		297.9
(0.1)
P 		318.6
(1.3)
P 		280
(-0.9)
P 		324.3
(1.7)
P 		347.5
(3)
P 		104
B 236.1
(-3)
P 		364
(1)
P 		429.9
(3)
P 		337.2
(0.1)
P 		253.3
(-2.5)
P 		353.3
(0.6)
P 		194
C 191.1
(-2.7)
P 		370
(3)
P 		297.5
(0.7)
P 		307.3
(1)
P 		181.2
(-3)
P 		308.1
(1)
P 		189
avr 223.7
(-3) 		344
(2.8) 		348.7
(3) 		308.2
(1.1) 		252.9
(-1.6) 		336.3
(2.4) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 133.3
(3)
P 		42.9
(-2.4)
P 		32.9
(-3)
P 		110.3
(1.6)
P 		100
B 130.4
(0.3)
P 		39.8
(-2.5)
P 		24.7
(-3)
P 		217.8
(3)
P 		193
C 141.6
(3)
P 		43
(-2.3)
P 		29.8
(-3)
P 		137.1
(2.8)
P 		112
avr 135.1
(2) 		41.9
(-2.4) 		29.1
(-3) 		155.1
(3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 45
(-3)
P 		106
(3)
P 		69.4
(-0.6)
P 		71
(-0.4)
P 		97.9
(2.2)
P 		84.6
(0.9)
P 		61
B 82.1
(-3)
P 		121.2
(1.7)
P 		104.4
(-0.3)
P 		89.3
(-2.1)
P 		102.9
(-0.5)
P 		131.8
(3)
P 		50
C 70.8
(-1.7)
P 		112.9
(3)
P 		75.7
(-1.1)
P 		61.8
(-2.6)
P 		58.6
(-3)
P 		103.1
(1.9)
P 		54
avr 66
(-3) 		113.4
(3) 		83.2
(-0.8) 		74
(-2) 		86.5
(-0.4) 		106.5
(2.1) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172945_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26277
Sequence Type Exemplar sequence
Representative Public ID C30225 NCBI
Target Description C30225_rc /REP_DB=TREMBL Accession /FEA=EST Transcript /REVCOMP /GB=C30225 /DEF=C.elegans cDNA clone yk230d6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a EST Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075726(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075726 NCBI Caenorhabditis elegans F13C5.1 (F13C5.1) mRNA, complete cds. 11/11 A 
F13C5.1 ENSEMBL cdna:known chromosome:CEL140:X:601575:604922:1 gene:F13C5.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042502 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:602998-604922(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13C5.1
Entrez Gene 180411 Entrez gene
SwissProt O76564 EMBL-EBI
WormBase CE19383 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC64611 Hypothetical protein F13C5.1 [Caenorhabditis elegans] ref|NP_508127.1| F13C5.1 [Caenorhabditis elegans] 0.0
blast CAE63644 Hypothetical protein CBG08142 [Caenorhabditis briggsae] 3.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508127.1 2 10-27,60-82
F13C5.1 2 10-27,60-82
Sequence
Target Sequence 
>C. ELEGANS:172945_S_AT
gacaatcggagtacttcctctggatgacaatagctacgcggccaatatttgttcggctgc
caacattcccttcctggcttattattctgtagaaatgtttaatattgtgatttttattcc
aaaaacctttctctcatactttcttgtcagtttctccacattttccatctcatcctcctc
atntacacaccggttttccatttgtacatatgttctatctcacatactttgtgacccaaa
ttcccagtgctttgttt

BLASTn GenBank NR
Note: "n"'s represent regions that are not probed by the probe sequences.
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAATCGGAGTACTTCCTCTGGAT 45 365 20 Antisense
TCCTCTGGATGACAATAGCTACGCG 118 593 35 Antisense
ATAGCTACGCGGCCAATATTTGTTC 1 23 49 Antisense
ATATTTGTTCGGCTGCCAACATTCC 654 17 64 Antisense
TTCCCTTCCTGGCTTATTATTCTGT 122 697 85 Antisense
ATTCCAAAAACCTTTCTCTCATACT 480 7 135 Antisense
CTCATACTTTCTTGTCAGTTTCTCC 308 229 152 Antisense
ACACACCGGTTTTCCATTTGTACAT 355 111 204 Antisense
ATTTGTACATATGTTCTATCTCACA 137 19 219 Antisense
CTATCTCACATACTTTGTGACCCAA 270 225 234 Antisense
GACCCAAATTCCCAGTGCTTTGTTT 516 381 252 Antisense
Sequence Source Affymetrix Proprietary Database