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[172943_x_at] Retroviral aspartyl proteases, Zinc finger, CCHC class

Description F30A10.7 /REP_DB=WormBase Gene ID /WP=CE09808 /TR=Q93645 /GB=CAB03024.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Retroviral aspartyl proteases, Zinc finger, CCHC class
Cluster 6grp_total > 0      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 32
(-3)
A 		135.3
(0.9)
A 		73.3
(-1.5)
A 		192.8
(3)
A 		161
B 26.3
(-3)
A 		32.7
(-2.7)
A 		46.2
(-2.1)
A 		158.8
(3)
A 		133
C 62.3
(-2.2)
A 		137.9
(3)
A 		50.2
(-3)
A 		126.9
(2.2)
A 		88
avr 40.2
(-3) 		102
(0.1) 		56.6
(-2.2) 		159.5
(3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 25.6
(-1.8)
A 		23.7
(-2)
A 		23.1
(-2.1)
A 		22.4
(-2.1)
A 		70.5
(3)
A 		14.2
(-3)
A 		56
B 23.4
(-1.8)
A 		50.4
(3)
A 		19.6
(-2.5)
A 		41.2
(1.4)
A 		20
(-2.4)
A 		16.8
(-3)
A 		34
C 33.9
(-1.1)
A 		62.6
(1.6)
A 		32.9
(-1.2)
A 		68.3
(2.2)
A 		13.3
(-3)
A 		77
(3)
A 		64
avr 27.6
(-2.3) 		45.6
(3) 		25.2
(-3) 		44
(2.5) 		34.6
(-0.2) 		36
(0.2) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 11.7
(-3)
A 		29.4
(3)
A 		19.2
(-0.5)
A 		28.2
(2.6)
A 		18
B 8.4
(-2.9)
A 		8.1
(-3)
A 		10.7
(-2.4)
A 		33.8
(3)
A 		26
C 20.6
(-2.2)
A 		39.6
(3)
A 		17.5
(-3)
A 		21.4
(-1.9)
A 		22
avr 13.6
(-3) 		25.7
(2.1) 		15.8
(-2.1) 		27.8
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 4.7
(-2.6)
A 		8.4
(-1.3)
A 		5
(-2.5)
A 		5.7
(-2.2)
A 		21.3
(3)
A 		3.4
(-3)
A 		18
B 8.1
(-1.4)
A 		16.8
(3)
A 		4.8
(-3)
A 		10.9
(0.1)
A 		8.1
(-1.4)
A 		6.3
(-2.3)
A 		12
C 12.6
(-0.7)
A 		19.1
(1.1)
A 		8.4
(-1.9)
A 		13.7
(-0.4)
A 		4.3
(-3)
A 		25.8
(3)
A 		22
avr 8.5
(-1.3) 		14.8
(3) 		6.1
(-3) 		10.1
(-0.2) 		11.2
(0.5) 		11.8
(0.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172943_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1941
Sequence Type Exemplar sequence
Representative Public ID F30A10.7 NCBI
Target Description F30A10.7 /REP_DB=WormBase Gene ID /WP=CE09808 /TR=Q93645 /GB=CAB03024.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Retroviral aspartyl proteases, Zinc finger, CCHC class
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060119(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060119 NCBI Caenorhabditis elegans F30A10.7 (F30A10.7) mRNA, complete cds. 11/11 A 
SNAP00000021994 ENSEMBL cdna:SNAP chromosome:CEL140:I:9505868:9508218:1 11/11 None
GENEFINDER00000022004 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9505868:9508218:1 11/11 None
F30A10.7 ENSEMBL cdna:known chromosome:CEL140:I:9505896:9508218:1 gene:F30A10.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061895 5/11 Cross Hyb Matching Probes A 
GENEFINDER00000038402 5/11 Cross Hyb Matching Probes None
SNAP00000038378 5/11 Cross Hyb Matching Probes None
SNAP00000019494 5/11 Cross Hyb Matching Probes None
GENEFINDER00000019500 5/11 Cross Hyb Matching Probes None
SNAP00000016607 7/11 Cross Hyb Matching Probes None
GENEFINDER00000016614 7/11 Cross Hyb Matching Probes None
SNAP00000002150 3/11 Cross Hyb Matching Probes None
SNAP00000002151 3/11 Cross Hyb Matching Probes None
SNAP00000024126 4/11 Cross Hyb Matching Probes None
GENEFINDER00000024138 4/11 Cross Hyb Matching Probes None
SNAP00000039412 6/11 Cross Hyb Matching Probes None
GENEFINDER00000039414 6/11 Cross Hyb Matching Probes None
SNAP00000033482 3/11 Cross Hyb Matching Probes None
K02F6.1 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9506055-9508149(+) 42.12 100.0
chrII:2554219-2556313(+) 41.31 98.47
chrV:5146806-5150019(-) 53.82 98.23
Public Domain and Genome References
Gene Title Retroviral aspartyl proteases, Zinc finger, CCHC class
Ensembl F30A10.7
Entrez Gene 185125 Entrez gene
SwissProt Q93645 EMBL-EBI
WormBase CE09808 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03024 Hypothetical protein F30A10.7 [Caenorhabditis elegans] ref|NP_492520.1| F30A10.7 [Caenorhabditis elegans] 0.0
blast AAB66101 Hypothetical protein K02F6.1 [Caenorhabditis elegans] ref|NP_494296.1| K02F6.1 [Caenorhabditis elegans] 0.0
blast D89042 protein F14F9.6 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 1.1E-6
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 1.1E-6
Sequence
Target Sequence 
>C. ELEGANS:172943_X_AT
aaatttgtcgctcaaggtgtccgtggggaggggagggaagctaatccagttttagtttca
gattcttctgtttttggttttagtgctccagatttgtcagcttgtgattctgttggttct
cgatctgctcgtgaagtcgtctcgtcggttgccggcaatgctcgaaatgctacttgtgca
aatataactacgattcatgttacggagagcaagagttcgttgaagaaaagccacagaaga
cgtcgccgtgtggcaaagagtcgccaatcatatacttctggaagttcgccaatcaaagaa
acccatctggaccccctgctggaatccgatgttgcgagtgacggcgagcgtttccaaccc
ggcatcctcctgtgtcattctcttcgacagagtcacccacgacaagttgtgcgaggatca
gccccaaacactgatcatgcctccactcgccgcagaggtcgatataccgcctctggtcgt
gatgcccctagcccaggcataatttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTTGTCGCTCAAGGTGTCCGTG 559 113 1555 Antisense
AGCTTGTGATTCTGTTGGTTCTCGA 566 77 1653 Antisense
TGGTTCTCGATCTGCTCGTGAAGTC 553 551 1668 Antisense
GGTTGCCGGCAATGCTCGAAATGCT 558 507 1701 Antisense
CCCCTGCTGGAATCCGATGTTGCGA 324 261 1867 Antisense
TTGCGAGTGACGGCGAGCGTTTCCA 476 699 1886 Antisense
GTCATTCTCTTCGACAGAGTCACCC 589 467 1928 Antisense
GAGTCACCCACGACAAGTTGTGCGA 122 401 1944 Antisense
TCAGCCCCAAACACTGATCATGCCT 80 625 1972 Antisense
TCCACTCGCCGCAGAGGTCGATATA 364 587 1996 Antisense
GCCCCTAGCCCAGGCATAATTTCTG 463 285 2038 Antisense
Sequence Source Affymetrix Proprietary Database