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[172942_x_at] serine protease inhibitor

Description C03G6.19 /REP_DB=WormBase Gene ID /WP=CE27579 /GEN=srp-6 /TR=O01462 /GB=AAB52318.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=serine protease inhibitor
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 65      6grp_total > 74      4grp_total > 30      6grp_cgc > 66      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 381
1 2 3 4 range
A 804.4
(3)
P 		615
(-2.4)
P 		594.5
(-3)
P 		746.3
(1.3)
P 		210
B 818.8
(2.9)
P 		823.7
(3)
P 		627.6
(-3)
P 		754
(0.9)
P 		196
C 939
(3)
P 		557.9
(-3)
P 		646.7
(-1.6)
P 		790
(0.7)
P 		381
avr 854.1
(3) 		665.5
(-1.9) 		622.9
(-3) 		763.4
(0.6) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 575
1 2 3 4 5 6 range
A 1012.7
(-2.6)
P 		988.4
(-3)
P 		1284.5
(2.4)
P 		1317.8
(3)
P 		1093.1
(-1.1)
P 		1276.8
(2.3)
P 		329
B 852
(-3)
P 		916.3
(-2.3)
P 		1324
(2.1)
P 		1412.5
(3)
P 		1093.2
(-0.4)
P 		1279.2
(1.6)
P 		561
C 890.1
(-3)
P 		887.8
(-3)
P 		1265
(1.2)
P 		1148.7
(-0.1)
P 		1358.7
(2.2)
P 		1427.1
(3)
P 		539
avr 918.3
(-3) 		930.8
(-2.8) 		1291.2
(2.5) 		1293
(2.5) 		1181.7
(0.9) 		1327.7
(3) 		409
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 292.9
(3)
P 		133.5
(-2.2)
P 		155.4
(-1.5)
P 		109.2
(-3)
P 		184
B 261.1
(3)
P 		203.4
(0)
P 		145.4
(-3)
P 		160.7
(-2.2)
P 		116
C 310.8
(3)
P 		160.4
(-2.1)
P 		225.4
(0.1)
P 		133.2
(-3)
P 		178
avr 288.3
(3) 		165.8
(-1.8) 		175.4
(-1.4) 		134.4
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 186.7
(-3)
P 		351.5
(3)
P 		279.7
(0.4)
P 		334.2
(2.4)
P 		329.9
(2.2)
P 		310.9
(1.5)
P 		165
B 296.5
(-3)
P 		305
(-2.7)
P 		321.5
(-2.2)
P 		374.1
(-0.4)
P 		444.2
(1.9)
P 		477
(3)
P 		181
C 329.9
(-0.6)
P 		270.9
(-2)
P 		322
(-0.8)
P 		231
(-3)
P 		439.7
(2.1)
P 		477.7
(3)
P 		247
avr 271
(-3) 		309.1
(-1.5) 		307.7
(-1.5) 		313.1
(-1.3) 		404.6
(2.3) 		421.9
(3) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172942_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11985
Sequence Type Exemplar sequence
Representative Public ID C03G6.19 NCBI
Target Description C03G6.19 /REP_DB=WormBase Gene ID /WP=CE27579 /GEN=srp-6 /TR=O01462 /GB=AAB52318.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=serine protease inhibitor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072489(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072489 NCBI Caenorhabditis elegans SeRPin family member (srp-6) (srp-6) mRNA, complete cds. 11/11 A 
SNAP00000031563 ENSEMBL cdna:SNAP chromosome:CEL140:V:7386901:7388209:-1 11/11 None
GENEFINDER00000031575 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7386901:7388209:-1 11/11 None
C03G6.19 ENSEMBL cdna:known chromosome:CEL140:V:7386879:7388684:-1 gene:C03G6.19 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072488 6/11 Cross Hyb Matching Probes A 
SNAP00000031562 6/11 Cross Hyb Matching Probes None
GENEFINDER00000031567 6/11 Cross Hyb Matching Probes None
C03G6.18 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7386901-7388210(-) 100.0 100.0
chrV:7384618-7385903(-) 93.91 93.91
Public Domain and Genome References
Gene Title serine protease inhibitor
Gene Symbol srp-6
Ensembl C03G6.19
Entrez Gene 179125 Entrez gene
SwissProt O01462 EMBL-EBI
WormBase CE27579 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1626851_AT dm
DROSGENOME1:146702_AT dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52318 Serpin protein 6 [Caenorhabditis elegans] ref|NP_504890.1| SeRPin family member (srp-6) [Caenorhabditis elegans] gb|AAS13530.1| serine or cysteine protease inhibitor [Caenorhabditis elegans] 0.0
blast AAB37055 Serpin protein 7, isoform a [Caenorhabditis elegans] ref|NP_001023822.1| SeRPin family member (srp-7) [Caenorhabditis elegans] gb|AAS13531.1| serine or cysteine protease inhibitor [Caenorhabditis elegans] 1.0E-147
blast CAE66111 Hypothetical protein CBG11331 [Caenorhabditis briggsae] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR000215 EMBL-EBI Serpin 5.7E-81
Pfam IPR000215 EMBL-EBI Serpin 5.7E-81
Sequence
Target Sequence 
>C. ELEGANS:172942_X_AT
gaaactgagtttcttcattctcgtaattcaaatcgaaagtactctgaaaacggccagttc
caagttttgagtcttccgtacaaagacaccagtttcgctttgagtattttcttaccaaaa
actagatttggtctctctgaagctcttcaaaacttggactctgtcactatccagcaatta
atgtcaaatacttctaacacgttggtcaatattgcaatgccaaagtggaaaatcgaaact
gcacttgggttgaatcgagctttaatggccgttggaattgagaaagctttcacagattcc
gcagatctgagcaactttgcagatggaatctatatttcacaagcagctcacaaagcactt
attgaagtcgatgaagacggaactgttgcggctgcagcaacaaccatttcattttcactt
acatcagtttttattccggccgaagaaccaatcgaattcactgcagatcatccattccta
ttcatcctctcaaaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACTGAGTTTCTTCATTCTCGTA 411 357 583 Antisense
GACACCAGTTTCGCTTTGAGTATTT 161 369 667 Antisense
AGATTTGGTCTCTCTGAAGCTCTTC 171 65 706 Antisense
ACTTGGACTCTGTCACTATCCAGCA 249 105 734 Antisense
ATCGAGCTTTAATGGCCGTTGGAAT 518 33 836 Antisense
AAAGCTTTCACAGATTCCGCAGATC 91 125 865 Antisense
GAAGACGGAACTGTTGCGGCTGCAG 237 339 955 Antisense
GCAGCAACAACCATTTCATTTTCAC 617 313 976 Antisense
TACATCAGTTTTTATTCCGGCCGAA 548 643 1002 Antisense
AATTCACTGCAGATCATCCATTCCT 164 177 1037 Antisense
CATTCCTATTCATCCTCTCAAAAGA 451 217 1055 Antisense
Sequence Source Affymetrix Proprietary Database