[Home] | [Total List]

[172938_x_at] major sperm protein (MSP1)

Description ZK1251.6 /REP_DB=WormBase Gene ID /WP=CE03853 /GEN=msp-76 /TR=Q27280 /GB=CAA92502.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=major sperm protein (MSP1)
Cluster 6grp_total > 99      4grp_total > 03      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 733
1 2 3 4 range
A 75
(-2.5)
A 		19.9
(-3)
A 		53.7
(-2.7)
A 		752.5
(3)
P 		733
B 123.7
(-1.8)
A 		59.1
(-2.9)
A 		53.7
(-3)
A 		417.4
(3)
P 		364
C 118.3
(-2.4)
M 		50.2
(-3)
A 		57.8
(-2.9)
A 		719.9
(3)
P 		670
avr 105.7
(-2.4) 		43.1
(-3) 		55.1
(-2.9) 		629.9
(3) 		587

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9173
1 2 3 4 5 6 range
A 86.2
(-3)
A 		82.8
(-3)
A 		126.2
(-3)
P 		815.2
(-2.5)
P 		5443.3
(0.5)
P 		9181.5
(3)
P 		9099
B 93
(-3)
A 		121.8
(-3)
A 		95.7
(-3)
A 		737.7
(-2.5)
P 		7038.3
(2.6)
P 		7504
(3)
P 		7411
C 8.5
(-3)
A 		177.3
(-2.9)
P 		41.2
(-3)
A 		548.4
(-2.6)
P 		8286.3
(3)
P 		6158
(1.5)
P 		8278
avr 62.6
(-3) 		127.3
(-2.9) 		87.7
(-3) 		700.4
(-2.5) 		6922.6
(2.5) 		7614.5
(3) 		7552
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 27.3
(-1.7)
A 		4.3
(-3)
A 		14
(-2.5)
A 		110.2
(3)
P 		106
B 39.5
(-0.9)
A 		14.6
(-2.8)
A 		12.5
(-3)
A 		89
(3)
P 		77
C 39.1
(-1.6)
M 		14.4
(-3)
A 		20.2
(-2.7)
A 		121.4
(3)
P 		107
avr 35.3
(-1.5) 		11.1
(-3) 		15.6
(-2.7) 		106.9
(3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2856
1 2 3 4 5 6 range
A 15.9
(-3)
A 		29.5
(-3)
A 		27.5
(-3)
P 		206.8
(-2.5)
P 		1642.5
(1.4)
P 		2235.4
(3)
P 		2220
B 32.4
(-3)
A 		40.6
(-3)
A 		23.2
(-3)
A 		195.4
(-2.6)
P 		2859.6
(3)
P 		2798.2
(2.9)
P 		2836
C 3.2
(-3)
A 		54.1
(-2.9)
P 		10.5
(-3)
A 		110.3
(-2.8)
P 		2681.3
(3)
P 		2061.4
(1.6)
P 		2678
avr 17.2
(-3) 		41.4
(-2.9) 		20.4
(-3) 		170.8
(-2.6) 		2394.5
(3) 		2365
(2.9) 		2377
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172938_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9643
Sequence Type Exemplar sequence
Representative Public ID ZK1251.6 NCBI
Target Description ZK1251.6 /REP_DB=WormBase Gene ID /WP=CE03853 /GEN=msp-76 /TR=Q27280 /GB=CAA92502.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=major sperm protein (MSP1)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069321 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-76) (msp-76) mRNA, complete cds. 11/11 None
SNAP00000023386 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9688992:9689375:1 11/11 None
GENEFINDER00000023395 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9688992:9689375:1 11/11 None
ZK1251.6 ENSEMBL cdna:known chromosome:CEL140:IV:9688992:9689375:1 gene:ZK1251.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069433 4/11 Cross Hyb Matching Probes A 
NM_062497 2/11 Cross Hyb Matching Probes A 
NM_068370 2/11 Cross Hyb Matching Probes A 
NM_069448 4/11 Cross Hyb Matching Probes A 
NM_068310 2/11 Cross Hyb Matching Probes A 
NM_068312 2/11 Cross Hyb Matching Probes A 
NM_068313 1/11 Cross Hyb Matching Probes A 
NM_069063 1/11 Cross Hyb Matching Probes A 
NM_062558 1/11 Cross Hyb Matching Probes A 
NM_068351 2/11 Cross Hyb Matching Probes A 
NM_068354 2/11 Cross Hyb Matching Probes A 
NM_068359 1/11 Cross Hyb Matching Probes A 
NM_068377 3/11 Cross Hyb Matching Probes A 
NM_068379 2/11 Cross Hyb Matching Probes A 
NM_062490 1/11 Cross Hyb Matching Probes A 
NM_062500 2/11 Cross Hyb Matching Probes A 
NM_062743 1/11 Cross Hyb Matching Probes A 
NM_062748 1/11 Cross Hyb Matching Probes A 
NM_062753 1/11 Cross Hyb Matching Probes A 
NM_069339 5/11 Cross Hyb Matching Probes A 
NM_069341 6/11 Cross Hyb Matching Probes A 
NM_069358 5/11 Cross Hyb Matching Probes A 
NM_069359 8/11 Cross Hyb Matching Probes A 
NM_069361 7/11 Cross Hyb Matching Probes A 
NM_069380 4/11 Cross Hyb Matching Probes A 
NM_062457 1/11 Cross Hyb Matching Probes A 
NM_062464 1/11 Cross Hyb Matching Probes A 
NM_068372 2/11 Cross Hyb Matching Probes A 
SNAP00000024816 3/11 Cross Hyb Matching Probes None
GENEFINDER00000024829 3/11 Cross Hyb Matching Probes None
SNAP00000000807 1/11 Cross Hyb Matching Probes None
SNAP00000000808 1/11 Cross Hyb Matching Probes None
GENEFINDER00000000821 1/11 Cross Hyb Matching Probes None
SNAP00000007649 2/11 Cross Hyb Matching Probes None
GENEFINDER00000007652 2/11 Cross Hyb Matching Probes None
SNAP00000016470 1/11 Cross Hyb Matching Probes None
GENEFINDER00000016484 1/11 Cross Hyb Matching Probes None
SNAP00000019951 1/11 Cross Hyb Matching Probes None
GENEFINDER00000019958 1/11 Cross Hyb Matching Probes None
SNAP00000031245 1/11 Cross Hyb Matching Probes None
GENEFINDER00000031258 1/11 Cross Hyb Matching Probes None
SNAP00000034943 2/11 Cross Hyb Matching Probes None
GENEFINDER00000034961 2/11 Cross Hyb Matching Probes None
SNAP00000041369 1/11 Cross Hyb Matching Probes None
SNAP00000041374 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041386 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041398 1/11 Cross Hyb Matching Probes None
SNAP00000043869 1/11 Cross Hyb Matching Probes None
SNAP00000043876 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043883 1/11 Cross Hyb Matching Probes None
SNAP00000002639 1/11 Cross Hyb Matching Probes None
SNAP00000002641 1/11 Cross Hyb Matching Probes None
GENEFINDER00000002656 1/11 Cross Hyb Matching Probes None
GENEFINDER00000002661 1/11 Cross Hyb Matching Probes None
SNAP00000004243 5/11 Cross Hyb Matching Probes None
SNAP00000004244 8/11 Cross Hyb Matching Probes None
SNAP00000004246 7/11 Cross Hyb Matching Probes None
GENEFINDER00000004263 5/11 Cross Hyb Matching Probes None
GENEFINDER00000004265 8/11 Cross Hyb Matching Probes None
GENEFINDER00000004273 7/11 Cross Hyb Matching Probes None
SNAP00000005864 3/11 Cross Hyb Matching Probes None
SNAP00000005865 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005869 3/11 Cross Hyb Matching Probes None
SNAP00000006004 2/11 Cross Hyb Matching Probes None
SNAP00000006006 2/11 Cross Hyb Matching Probes None
SNAP00000006011 1/11 Cross Hyb Matching Probes None
SNAP00000006013 3/11 Cross Hyb Matching Probes None
SNAP00000006015 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006018 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006020 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006021 3/11 Cross Hyb Matching Probes None
GENEFINDER00000006023 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006024 2/11 Cross Hyb Matching Probes None
SNAP00000007231 2/11 Cross Hyb Matching Probes None
GENEFINDER00000007236 2/11 Cross Hyb Matching Probes None
SNAP00000029404 2/11 Cross Hyb Matching Probes None
SNAP00000029405 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029413 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029416 1/11 Cross Hyb Matching Probes None
SNAP00000029847 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029849 1/11 Cross Hyb Matching Probes None
SNAP00000034129 2/11 Cross Hyb Matching Probes None
SNAP00000034134 2/11 Cross Hyb Matching Probes None
GENEFINDER00000034137 2/11 Cross Hyb Matching Probes None
GENEFINDER00000034140 2/11 Cross Hyb Matching Probes None
SNAP00000040132 4/11 Cross Hyb Matching Probes None
SNAP00000040134 4/11 Cross Hyb Matching Probes None
GENEFINDER00000040145 4/11 Cross Hyb Matching Probes None
SNAP00000041533 4/11 Cross Hyb Matching Probes None
GENEFINDER00000041543 4/11 Cross Hyb Matching Probes None
SNAP00000043472 5/11 Cross Hyb Matching Probes None
SNAP00000043475 6/11 Cross Hyb Matching Probes None
GENEFINDER00000043484 5/11 Cross Hyb Matching Probes None
GENEFINDER00000043489 6/11 Cross Hyb Matching Probes None
SNAP00000043994 1/11 Cross Hyb Matching Probes None
F26G1.7 1/11 Cross Hyb Matching Probes A 
F26G1.8 1/11 Cross Hyb Matching Probes None
C33F10.9 1/11 Cross Hyb Matching Probes A 
R05F9.3 1/11 Cross Hyb Matching Probes R A 
R05F9.13 2/11 Cross Hyb Matching Probes A 
ZK546.6 2/11 Cross Hyb Matching Probes A 
F59A6.8 2/11 Cross Hyb Matching Probes None
F58A6.8 1/11 Cross Hyb Matching Probes A 
K05F1.2 1/11 Cross Hyb Matching Probes A 
ZK1248.6 1/11 Cross Hyb Matching Probes A 
ZK1248.4 1/11 Cross Hyb Matching Probes A 
C09B9.6 2/11 Cross Hyb Matching Probes A 
R13H9.2 2/11 Cross Hyb Matching Probes A 
R13H9.4 1/11 Cross Hyb Matching Probes A 
Y59E9AR.7 2/11 Cross Hyb Matching Probes A 
Y59E9AR.1 2/11 Cross Hyb Matching Probes A 
F36H12.7 1/11 Cross Hyb Matching Probes A 
F36H12.6 1/11 Cross Hyb Matching Probes None
ZK354.5 2/11 Cross Hyb Matching Probes A 
ZK354.4 2/11 Cross Hyb Matching Probes A 
ZK354.10 2/11 Cross Hyb Matching Probes None
ZK354.11 3/11 Cross Hyb Matching Probes A 
ZK354.1 2/11 Cross Hyb Matching Probes A 
Y59H11AM.1 1/11 Cross Hyb Matching Probes A 
T13F2.10 5/11 Cross Hyb Matching Probes A 
T13F2.11 6/11 Cross Hyb Matching Probes A 
W08D2.9 1/11 Cross Hyb Matching Probes None
K07F5.1 5/11 Cross Hyb Matching Probes A 
K07F5.2 8/11 Cross Hyb Matching Probes A 
K07F5.3 7/11 Cross Hyb Matching Probes A 
F32B6.6 4/11 Cross Hyb Matching Probes A 
C04G2.3 5/11 Cross Hyb Matching Probes None
C04G2.4 4/11 Cross Hyb Matching Probes A 
K08F4.8 3/11 Cross Hyb Matching Probes A 
K08F4.10 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4933009-4933393(+) 91.67 91.67
chrII:4825399-4825783(+) 90.36 90.36
chrIV:9688997-9689381(+) 100.0 100.0
chrIV:9837628-9838012(+) 97.66 97.66
chrIV:9841518-9841902(+) 97.4 97.4
chrIV:10095410-10095794(+) 95.83 95.83
chrIV:9770025-9770409(+) 95.57 95.57
chrIV:9894608-9894992(+) 94.79 94.79
chrIV:10093057-10093457(+) 95.05 95.05
chrIV:5297956-5298340(+) 92.19 92.19
chrIV:5316517-5316901(+) 92.19 92.19
chrIV:5062573-5063064(+) 91.93 91.93
chrIV:5260583-5260967(+) 90.89 90.89
chrIV:5249434-5249815(+) 90.36 90.36
chrIV:8571425-8571809(+) 90.62 90.62
chrII:4916162-4916546(-) 91.15 91.15
chrII:4785883-4786267(-) 90.62 90.62
chrIV:9836013-9836397(-) 95.83 95.83
chrIV:9766750-9767134(-) 95.31 95.31
chrIV:10143333-10143717(-) 94.53 94.53
Public Domain and Genome References
Gene Title major sperm protein (MSP1)
Gene Symbol msp-76
Ensembl ZK1251.6
Entrez Gene 177802 Entrez gene
SwissProt P05634 EMBL-EBI
WormBase CE03853 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94283 Hypothetical protein K07F5.3 [Caenorhabditis elegans] emb|CAA94278.1| Hypothetical protein K07F5.2 [Caenorhabditis elegans] emb|CAA92502.1| Hypothetical protein ZK1251.6 [Caenorhabditis elegans] emb|CAA94674.1| Hypothetical protein C04G2.4 [Caenorhabditis elegans] ref|NP_501834.1| Major Sperm Protein family member (msp-36) [Caenorhabditis elegans] ref|NP_501762.1| Major Sperm Protein family member (msp-56) [Caenorhabditis elegans] ref|NP_501760.1| Major Sperm Protein family member (msp-10) [Caenorhabditis elegans] ref|NP_501722.1| Major Sperm Protein family member (msp-76) [Caenorhabditis elegans] sp|P05634|MSP10_CAEEL Major sperm protein 10/36/56/76 (MSP) emb|CAE59492.1| Hypothetical protein CBG02877 [Caenorhabditis briggsae] emb|CAE59433.1| Hypothetical protein CBG02806 [Caenorhabditis briggsae] emb|CAE59411.1| Hypothetical protein CBG02775 [Caenorhabditis briggsae] 2.0E-71
blast CAE60837 Hypothetical protein CBG04546 [Caenorhabditis briggsae] 3.0E-71
blast CAE59132 Hypothetical protein CBG02432 [Caenorhabditis briggsae] emb|CAE59019.1| Hypothetical protein CBG02296 [Caenorhabditis briggsae] emb|CAE59007.1| Hypothetical protein CBG02283 [Caenorhabditis briggsae] emb|CAE73212.1| Hypothetical protein CBG20617 [Caenorhabditis briggsae] emb|CAE73205.1| Hypothetical protein CBG20609 [Caenorhabditis briggsae] emb|CAE65094.1| Hypothetical protein CBG09953 [Caenorhabditis briggsae] 4.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 3.6E-35
Sequence
Target Sequence 
>C. ELEGANS:172938_X_AT
caaacccaaccaaacgcgaagatcgtcttcaatgcaccatacgatgacaagcacacctac
cacatcaaggtgatcaactcatcggctcgtcgtattggatatggcatcaagaccaccaac
atgaagagacttggagttgatccaccatgtggagttctcgacccaaaggaagctgtgctt
cttgctgtttcttgcgatgcttttgccttcggacaagaggataccaacaacgatcgtatc
acagttgaatggaccaacaccccggatggtgctgccaaacaattccgtcgtgaatggttc
caggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAACCCAACCAAACGCGAAGATCG 579 169 43 Antisense
GAAGATCGTCTTCAATGCACCATAC 121 339 60 Antisense
CATACGATGACAAGCACACCTACCA 161 215 80 Antisense
TCAAGGTGATCAACTCATCGGCTCG 147 633 107 Antisense
ACTCATCGGCTCGTCGTATTGGATA 660 99 119 Antisense
ACCATGTGGAGTTCTCGACCCAAAG 495 83 186 Antisense
CTTCTTGCTGTTTCTTGCGATGCTT 374 221 220 Antisense
GATGCTTTTGCCTTCGGACAAGAGG 52 413 238 Antisense
GATCGTATCACAGTTGAATGGACCA 393 417 274 Antisense
GATGGTGCTGCCAAACAATTCCGTC 635 407 307 Antisense
AATTCCGTCGTGAATGGTTCCAGGG 668 173 323 Antisense
Sequence Source Affymetrix Proprietary Database