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[172937_s_at]

Description F23B2.9 /REP_DB=WormBase Gene ID /WP=CE09589 /TR=O02251 /GB=CAB05184.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=PDZ domain (Also known as DHR or GLGF).
Cluster 6grp_total > 10      4grp_total > 37      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 22.2
(1.7)
A 		0.6
(-3)
A 		10.6
(-0.8)
A 		28.3
(3)
A 		28
B 9.6
(3)
A 		1
(-2.9)
A 		6.8
(1.1)
A 		0.9
(-3)
A 		9
C 11.1
(-0.8)
A 		27.4
(3)
A 		1.4
(-3)
A 		1.6
(-3)
A 		26
avr 14.3
(3) 		9.7
(-0.5) 		6.3
(-3) 		10.3
(0) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.5
(-2.3)
A 		7.7
(0.3)
A 		1.2
(-3)
A 		13
(3)
A 		8.5
(0.7)
A 		1.4
(-2.9)
A 		12
B 0.5
(-3)
A 		0.8
(-2.9)
A 		18.9
(3)
A 		2.1
(-2.5)
A 		10
(0.1)
A 		7.8
(-0.6)
A 		18
C 8.2
(-0.3)
A 		17.5
(3)
A 		1.9
(-2.5)
A 		0.7
(-3)
A 		0.6
(-3)
A 		4.6
(-1.6)
A 		17
avr 3.7
(-3) 		8.7
(3) 		7.3
(1.3) 		5.3
(-1.1) 		6.4
(0.2) 		4.6
(-1.9) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 8.1
(3)
A 		0.1
(-3)
A 		2.8
(-1)
A 		4.1
(-0)
A 		8
B 3.1
(3)
A 		0.2
(-3)
A 		1.6
(-0.1)
A 		0.2
(-3)
A 		3
C 3.7
(-0.3)
A 		7.9
(3)
A 		0.5
(-2.8)
A 		0.3
(-3)
A 		8
avr 5
(3) 		2.7
(-0.9) 		1.6
(-2.8) 		1.5
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.5
(-2.6)
A 		2.8
(2)
A 		0.3
(-3)
A 		3.3
(3)
A 		2.6
(1.6)
A 		0.3
(-3)
A 		3
B 0.2
(-3)
A 		0.3
(-2.9)
A 		4.6
(3)
A 		0.5
(-2.6)
A 		4.1
(2.3)
A 		2.9
(0.7)
A 		4
C 3.1
(0.5)
A 		5.3
(3)
A 		0.5
(-2.5)
A 		0.1
(-3)
A 		0.2
(-2.9)
A 		1.5
(-1.4)
A 		5
avr 1.3
(-3) 		2.8
(3) 		1.8
(-1) 		1.3
(-3) 		2.3
(1) 		1.6
(-1.8) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172937_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8657
Sequence Type Exemplar sequence
Representative Public ID F23B2.9 NCBI
Target Description F23B2.9 /REP_DB=WormBase Gene ID /WP=CE09589 /TR=O02251 /GB=CAB05184.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=PDZ domain (Also known as DHR or GLGF).
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069195
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069195 NCBI Caenorhabditis elegans F23B2.8 (F23B2.8) mRNA, complete cds. None
F23B2.8 ENSEMBL cdna:known chromosome:CEL140:IV:9152087:9152397:1 gene:F23B2.8 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9148935-9149339(+) 85.68 100.0
Public Domain and Genome References
Gene Title
Ensembl F23B2.8
Entrez Gene 184884 Entrez gene
SwissProt O02250 EMBL-EBI
WormBase CE32182 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05183 Hypothetical protein F23B2.8 [Caenorhabditis elegans] ref|NP_501596.2| F23B2.8 [Caenorhabditis elegans] 2.0E-41
blast T21302 hypothetical protein F23B2.9 - Caenorhabditis elegans 6.0E-25
blast CAD37352 Hypothetical protein C01F6.6b [Caenorhabditis elegans] emb|CAD36491.1| Hypothetical protein C01F6.6b [Caenorhabditis elegans] ref|NP_741479.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 4.0E-11
Sequence
Target Sequence 
>C. ELEGANS:172937_S_AT
atgtgctccggatattttgaattaaaacaaaattttccaattattcagaaaatctttttc
aaatactcatcactcgaagagtttggatttcaacttcatgctaaccaaactattggacat
tacattggaatagtttatgcagggagtattggtgaaacagctgggcttaaaaccggggaa
cgaattgtcggagtaaatgggcaactgatttatccaactaatacacataaagaagttgtt
cctctgatgaaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGCTCCGGATATTTTGAATTAA 544 47 13 Antisense
AATACTCATCACTCGAAGAGTTTGG 706 169 74 Antisense
AAGAGTTTGGATTTCAACTTCATGC 626 153 89 Antisense
TCAACTTCATGCTAACCAAACTATT 303 631 102 Antisense
AAACTATTGGACATTACATTGGAAT 176 121 119 Antisense
GGAGTATTGGTGAAACAGCTGGGCT 75 517 155 Antisense
TGAAACAGCTGGGCTTAAAACCGGG 356 571 165 Antisense
GAACGAATTGTCGGAGTAAATGGGC 573 323 190 Antisense
AATGGGCAACTGATTTATCCAACTA 243 163 208 Antisense
CTGATTTATCCAACTAATACACATA 95 239 217 Antisense
AAGAAGTTGTTCCTCTGATGAAACA 18 153 242 Antisense
Sequence Source Affymetrix Proprietary Database