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[172936_x_at]

Description Y47H9C.6 /REP_DB=WormBase Gene ID /WP=CE27635 /TR=Q9XWE0 /GB=CAA21735.3 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ICE-like protease (caspase) p10 domain.
Cluster 6grp_total > 36      4grp_total > 19      6grp_cgc > 14      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 66.2
(-1.9)
A 		48.1
(-3)
A 		49.1
(-2.9)
A 		144.9
(3)
A 		97
B 91.4
(-0.5)
A 		129.2
(3)
A 		65.1
(-3)
A 		91.4
(-0.5)
P 		64
C 87.1
(-2.7)
P 		83.8
(-3)
A 		90.1
(-2.5)
A 		161
(3)
P 		77
avr 81.6
(-1.7) 		87
(-1.2) 		68.1
(-3) 		132.4
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 69.5
(1.3)
A 		78.2
(3)
A 		47.7
(-3)
A 		58.7
(-0.8)
P 		59
(-0.8)
A 		75.2
(2.4)
P 		31
B 75.8
(3)
M 		72.4
(2.4)
A 		67.4
(1.4)
A 		43.9
(-3)
A 		44
(-3)
A 		47
(-2.4)
P 		32
C 57.4
(-2.5)
P 		71.6
(3)
P 		61.1
(-1)
A 		56
(-3)
A 		61.7
(-0.8)
A 		67.6
(1.5)
A 		16
avr 67.6
(1.2) 		74.1
(3) 		58.7
(-1.4) 		52.9
(-3) 		54.9
(-2.4) 		63.3
(-0.1) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 24.1
(3)
A 		10.4
(-3)
A 		12.8
(-1.9)
A 		21.2
(1.7)
A 		14
B 29.2
(2)
A 		31.9
(3)
A 		15.1
(-3)
A 		19.5
(-1.4)
P 		17
C 28.8
(0.9)
P 		24.1
(-3)
A 		31.4
(3)
A 		27.1
(-0.5)
P 		7
avr 27.4
(3) 		22.1
(-1.2) 		19.8
(-3) 		22.6
(-0.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 12.8
(-2.2)
A 		27.8
(3)
A 		10.4
(-3)
A 		14.9
(-1.4)
P 		17.8
(-0.4)
A 		18.3
(-0.3)
P 		17
B 26.4
(3)
M 		24.1
(2.1)
A 		16.4
(-1.1)
A 		11.6
(-3)
A 		17.9
(-0.4)
A 		17.5
(-0.6)
P 		15
C 21.3
(2.3)
P 		21.9
(2.6)
P 		15.5
(-0.8)
A 		11.3
(-3)
A 		20
(1.6)
A 		22.6
(3)
A 		11
avr 20.2
(0.8) 		24.6
(3) 		14.1
(-2.3) 		12.6
(-3) 		18.6
(0) 		19.5
(0.5) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172936_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1086
Sequence Type Exemplar sequence
Representative Public ID Y47H9C.6 NCBI
Target Description Y47H9C.6 /REP_DB=WormBase Gene ID /WP=CE27635 /TR=Q9XWE0 /GB=CAA21735.3 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=ICE-like protease (caspase) p10 domain.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060612
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000036901 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11896098:11899355:-1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060610 5/11 Cross Hyb Matching Probes A 
NM_060612 3/11 Cross Hyb Matching Probes None
SNAP00000036885 7/11 Cross Hyb Matching Probes None
Y47H9C.6 5/11 Cross Hyb Matching Probes A 
Y47H9C.15 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11896836-11898616(-) 90.41 90.41
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42375 Hypothetical protein Y47H9C.15 [Caenorhabditis elegans] ref|NP_493013.1| Y47H9C.15 [Caenorhabditis elegans] 2.0E-71
blast CAA21735 Hypothetical protein Y47H9C.6 [Caenorhabditis elegans] ref|NP_493011.2| CaSPase family member (csp-3) [Caenorhabditis elegans] gb|AAC98297.1| caspase-related protein 3 [Caenorhabditis elegans] 5.0E-34
blast AAC98296 caspase-related protein 2B [Caenorhabditis elegans] 2.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 3.3E-15
Pfam IPR001309 EMBL-EBI Caspase-1, p20 2.1E-21
Sequence
Target Sequence 
>C. ELEGANS:172936_X_AT
ccacggagaacccaatcgcagaaattggcggaacaaaatcgaaaccgatatgcgagaaaa
aaagcagctctggagcaatcagataaggtcgaatcggatgaggaggagaagttgagcgaa
tcagatgaggatgaggaaggaagaggagcagttgatgaatttgaattcgaatcaaacgat
gttccgtctccccaggctccaccgacaccgtcaattgctgatccgggccccacagcctct
tcatcgccactcactcaagaccccgcctcaaacgccactggattctctggtattaagttt
gagggcgaaatctcctcaatattcttctcatttcagtcacaccaaacctcgtcgtcgcaa
gcggatttattggtttctttctcaacgtcccctggctttctatcattcaaagatgaaacc
aaagacacatggtatattcaggagctttatcgagtgattattgagaacgcgaaagatact
catttggcggatcttctgacggagaccaacagacgagtcgtggagaaatatgaggcagat
aaagtagtgttcgtgtgtaagcaagcacctgagttctggtcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACGGAGAACCCAATCGCAGAAAT 4 275 301 Antisense
CGAATCAAACGATGTTCCGTCTCCC 464 249 468 Antisense
GACACCGTCAATTGCTGATCCGGGC 649 365 504 Antisense
AAACGCCACTGGATTCTCTGGTATT 462 125 570 Antisense
GCGAAATCTCCTCAATATTCTTCTC 453 289 605 Antisense
AATATTCTTCTCATTTCAGTCACAC 177 175 618 Antisense
AAACCTCGTCGTCGCAAGCGGATTT 462 123 644 Antisense
AGCGGATTTATTGGTTTCTTTCTCA 569 81 660 Antisense
CCCCTGGCTTTCTATCATTCAAAGA 698 261 689 Antisense
TTTGGCGGATCTTCTGACGGAGACC 662 665 783 Antisense
AGCAAGCACCTGAGTTCTGGTCGAG 203 77 860 Antisense
Sequence Source Affymetrix Proprietary Database