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[172935_x_at] serine/threonine protein phosphatase PP1

Description T03F1.5 /REP_DB=WormBase Gene ID /WP=CE13104 /TR=P91420 /GB=AAB42233.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase PP1
Cluster 6grp_total > 98      4grp_total > 26      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 6.3
(-3)
A 		55.7
(3)
A 		39.2
(1)
A 		49.6
(2.3)
A 		49
B 6.8
(-2.5)
A 		40.5
(2.5)
A 		3.6
(-3)
A 		44.2
(3)
A 		41
C 3.6
(-3)
A 		52.2
(0.9)
A 		34.5
(-0.5)
A 		79
(3)
A 		75
avr 5.6
(-3) 		49.5
(2.1) 		25.8
(-0.7) 		57.6
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1163
1 2 3 4 5 6 range
A 12
(-3)
A 		30.3
(-2.9)
A 		22.2
(-2.9)
A 		160.2
(-2.2)
P 		732
(0.7)
P 		1168.5
(3)
P 		1157
B 31
(-2.9)
A 		39.5
(-2.8)
A 		7.9
(-3)
A 		135.6
(-2.3)
P 		669
(0.6)
P 		1100.9
(3)
P 		1093
C 34.7
(-2.8)
A 		5.9
(-3)
A 		53.2
(-2.7)
A 		130
(-2.1)
P 		758.7
(2.3)
P 		864.7
(3)
P 		859
avr 25.9
(-3) 		25.2
(-3) 		27.8
(-3) 		141.9
(-2.3) 		719.9
(1.1) 		1044.7
(3) 		1020
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.3
(-3)
A 		12.1
(3)
A 		10.2
(1.8)
A 		7.3
(0.1)
A 		10
B 2.2
(-2.1)
A 		10
(3)
A 		0.8
(-3)
A 		9.4
(2.6)
A 		9
C 1.2
(-3)
A 		15
(3)
A 		12
(1.7)
A 		13.3
(2.3)
A 		14
avr 1.9
(-3) 		12.4
(3) 		7.7
(0.3) 		10
(1.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 409
1 2 3 4 5 6 range
A 2.2
(-3)
A 		10.8
(-2.8)
A 		4.8
(-2.9)
A 		40.6
(-2.2)
P 		220.9
(1.6)
P 		284.5
(3)
P 		282
B 10.8
(-2.9)
A 		13.2
(-2.8)
A 		1.9
(-3)
A 		35.9
(-2.5)
P 		271.8
(1)
P 		410.5
(3)
P 		409
C 12.9
(-2.8)
A 		1.8
(-3)
A 		13.5
(-2.8)
A 		26.1
(-2.5)
P 		245.5
(2.1)
P 		289.5
(3)
P 		288
avr 8.6
(-3) 		8.6
(-3) 		6.7
(-3) 		34.2
(-2.5) 		246.1
(1.5) 		328.2
(3) 		322
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172935_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.317
Sequence Type Exemplar sequence
Representative Public ID T03F1.5 NCBI
Target Description T03F1.5 /REP_DB=WormBase Gene ID /WP=CE13104 /TR=P91420 /GB=AAB42233.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase PP1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058836(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058836 NCBI Caenorhabditis elegans yeast Glc Seven-like Phosphatases family member (gsp-4) (gsp-4) mRNA, complete cds. 11/11 None
SNAP00000013111 ENSEMBL cdna:SNAP chromosome:CEL140:I:3838391:3839433:-1 11/11 None
GENEFINDER00000013126 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3838391:3839433:-1 11/11 None
T03F1.5 ENSEMBL cdna:known chromosome:CEL140:I:3838239:3839653:-1 gene:T03F1.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059028 7/11 Cross Hyb Matching Probes A 
SNAP00000028186 7/11 Cross Hyb Matching Probes None
GENEFINDER00000028196 7/11 Cross Hyb Matching Probes None
W09C3.6 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3838390-3839433(-) 100.0 100.0
chrI:4709372-4710422(-) 93.79 93.79
Public Domain and Genome References
Gene Title serine/threonine protein phosphatase PP1
Gene Symbol gsp-4
Ensembl T03F1.5
Entrez Gene 171960 Entrez gene
SwissProt P91420 EMBL-EBI
WormBase CE13104 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491237 yeast Glc Seven-like Phosphatases family member (gsp-4) [Caenorhabditis elegans] gb|AAB42233.1| Yeast glc seven-like phosphatases protein 4 [Caenorhabditis elegans] 1.0E-169
blast AAC24414 Yeast glc seven-like phosphatases protein 3 [Caenorhabditis elegans] ref|NP_491429.1| yeast Glc Seven-like Phosphatases family member (gsp-3) [Caenorhabditis elegans] 1.0E-167
blast CAE73431 Hypothetical protein CBG20874 [Caenorhabditis briggsae] 1.0E-164
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.2E-43
Sequence
Target Sequence 
>C. ELEGANS:172935_X_AT
gaacttcttcatgcttcgtggaaaccacgagtgcccagccatcaatcgtgtctatgggtt
ctacgaggagtgcaaccgtcgttacaagtcgactcgtctctggtcaatcttccaggacac
gttcaactggatgcctctctgtggactcattggttcccgcatcctctgcatgcatggtgg
cctctccccacacctccaaactcttgatcaactccgtcaacttcctcgccctcaggatcc
accaaatccatcgattggaatcgacttgttgtgggctgatccggatcaatgggtgaaggg
atggcaggcaaatactcgtggagtctcttatgtctttggacaggatgttgttgctgacgt
ttgctcgagacttgacatcgacttggttgctcgtgcacatcaagtcgttcaagacggcta
cgagttcttcgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTCTTCATGCTTCGTGGAAAC 133 351 354 Antisense
AGGAGTGCAACCGTCGTTACAAGTC 277 55 419 Antisense
GTTACAAGTCGACTCGTCTCTGGTC 485 445 434 Antisense
AGGACACGTTCAACTGGATGCCTCT 6 55 467 Antisense
TCTCTGTGGACTCATTGGTTCCCGC 271 609 489 Antisense
ACACCTCCAAACTCTTGATCAACTC 87 109 543 Antisense
GACTTGTTGTGGGCTGATCCGGATC 152 369 616 Antisense
TCGTGGAGTCTCTTATGTCTTTGGA 82 607 669 Antisense
GTTGTTGCTGACGTTTGCTCGAGAC 133 439 700 Antisense
TGACATCGACTTGGTTGCTCGTGCA 485 571 726 Antisense
TCAAGACGGCTACGAGTTCTTCGCC 10 633 762 Antisense
Sequence Source Affymetrix Proprietary Database