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[172934_x_at] major sperm protein MSP-38

Description K08F4.8 /REP_DB=WormBase Gene ID /WP=CE06156 /GEN=msp-38 /TR=SW:P53020 /GB=CAA93089.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=major sperm protein MSP-38
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 06      6grp_total > 99      4grp_total > 02      6grp_cgc > 79      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 662
1 2 3 4 range
A 46
(-3)
A 		83.5
(-2.6)
P 		51.8
(-2.9)
A 		686.5
(3)
P 		641
B 84.9
(-2.4)
P 		70.9
(-2.7)
P 		61.3
(-3)
P 		288.3
(3)
P 		227
C 98.2
(-2.3)
P 		54.2
(-2.7)
P 		24.3
(-3)
A 		630.1
(3)
P 		606
avr 76.4
(-2.6) 		69.5
(-2.7) 		45.8
(-3) 		535
(3) 		489

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9714
1 2 3 4 5 6 range
A 94
(-3)
M 		70.8
(-3)
A 		115.9
(-3)
P 		956.2
(-2.5)
P 		6119.8
(0.8)
P 		9745
(3)
P 		9674
B 45.8
(-3)
P 		83.4
(-3)
P 		97.4
(-3)
P 		621.3
(-2.5)
P 		6321.1
(2.2)
P 		7278.3
(3)
P 		7233
C 95.1
(-3)
A 		177.8
(-2.9)
P 		31.2
(-3)
A 		550.2
(-2.6)
P 		8474.6
(3)
P 		7377.4
(2.2)
P 		8443
avr 78.3
(-3) 		110.7
(-3) 		81.5
(-3) 		709.2
(-2.5) 		6971.8
(2.1) 		8133.6
(3) 		8055
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 16.7
(-2.8)
A 		18.1
(-2.7)
P 		13.5
(-3)
A 		100.5
(3)
P 		87
B 27.1
(-1.4)
P 		17.5
(-2.6)
P 		14.2
(-3)
P 		61.4
(3)
P 		47
C 32.5
(-1.5)
P 		15.6
(-2.6)
P 		8.5
(-3)
A 		106.2
(3)
P 		98
avr 25.4
(-2) 		17.1
(-2.6) 		12.1
(-3) 		89.4
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2734
1 2 3 4 5 6 range
A 17.3
(-3)
M 		25.2
(-3)
A 		25.2
(-3)
P 		242.5
(-2.4)
P 		1846.7
(1.7)
P 		2372.6
(3)
P 		2355
B 15.9
(-3)
P 		27.7
(-3)
P 		23.6
(-3)
P 		164.6
(-2.7)
P 		2568.2
(2.7)
P 		2714
(3)
P 		2698
C 35.2
(-2.9)
A 		54.2
(-2.9)
P 		7.9
(-3)
A 		110.7
(-2.8)
P 		2742.3
(3)
P 		2469.7
(2.4)
P 		2734
avr 22.8
(-3) 		35.7
(-3) 		18.9
(-3) 		172.6
(-2.6) 		2385.7
(2.7) 		2518.8
(3) 		2500
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172934_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8559
Sequence Type Exemplar sequence
Representative Public ID K08F4.8 NCBI
Target Description K08F4.8 /REP_DB=WormBase Gene ID /WP=CE06156 /GEN=msp-38 /TR=SW:P53020 /GB=CAA93089.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=major sperm protein MSP-38
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069448(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069448 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-38) (msp-38) mRNA, complete cds. 11/11 None
SNAP00000005864 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10143328:10143711:-1 11/11 None
GENEFINDER00000005869 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10143328:10143711:-1 11/11 None
K08F4.8 ENSEMBL cdna:known chromosome:CEL140:IV:10143328:10143711:-1 gene:K08F4.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069433 5/11 Cross Hyb Matching Probes A 
NM_062497 1/11 Cross Hyb Matching Probes A 
NM_068370 2/11 Cross Hyb Matching Probes A 
NM_068310 2/11 Cross Hyb Matching Probes A 
NM_068312 2/11 Cross Hyb Matching Probes A 
NM_068313 1/11 Cross Hyb Matching Probes A 
NM_069063 2/11 Cross Hyb Matching Probes A 
NM_062569 1/11 Cross Hyb Matching Probes A 
NM_062571 2/11 Cross Hyb Matching Probes A 
NM_068351 1/11 Cross Hyb Matching Probes A 
NM_068354 1/11 Cross Hyb Matching Probes A 
NM_068359 1/11 Cross Hyb Matching Probes A 
NM_068377 2/11 Cross Hyb Matching Probes A 
NM_068379 1/11 Cross Hyb Matching Probes A 
NM_062490 1/11 Cross Hyb Matching Probes A 
NM_069321 4/11 Cross Hyb Matching Probes A 
NM_069339 5/11 Cross Hyb Matching Probes A 
NM_069341 4/11 Cross Hyb Matching Probes A 
NM_069358 5/11 Cross Hyb Matching Probes A 
NM_069359 7/11 Cross Hyb Matching Probes A 
NM_069361 7/11 Cross Hyb Matching Probes A 
NM_069380 4/11 Cross Hyb Matching Probes A 
NM_062457 1/11 Cross Hyb Matching Probes A 
NM_062464 1/11 Cross Hyb Matching Probes A 
NM_068372 2/11 Cross Hyb Matching Probes A 
SNAP00000024816 2/11 Cross Hyb Matching Probes None
GENEFINDER00000024829 2/11 Cross Hyb Matching Probes None
SNAP00000000807 1/11 Cross Hyb Matching Probes None
GENEFINDER00000000821 1/11 Cross Hyb Matching Probes None
SNAP00000016470 1/11 Cross Hyb Matching Probes None
GENEFINDER00000016484 1/11 Cross Hyb Matching Probes None
SNAP00000021327 1/11 Cross Hyb Matching Probes None
SNAP00000021329 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021346 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021348 1/11 Cross Hyb Matching Probes None
SNAP00000043869 1/11 Cross Hyb Matching Probes None
SNAP00000043876 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043883 1/11 Cross Hyb Matching Probes None
SNAP00000002639 1/11 Cross Hyb Matching Probes None
SNAP00000002641 1/11 Cross Hyb Matching Probes None
GENEFINDER00000002656 1/11 Cross Hyb Matching Probes None
GENEFINDER00000002661 1/11 Cross Hyb Matching Probes None
SNAP00000004243 5/11 Cross Hyb Matching Probes None
SNAP00000004244 7/11 Cross Hyb Matching Probes None
SNAP00000004246 7/11 Cross Hyb Matching Probes None
GENEFINDER00000004263 5/11 Cross Hyb Matching Probes None
GENEFINDER00000004265 7/11 Cross Hyb Matching Probes None
GENEFINDER00000004273 7/11 Cross Hyb Matching Probes None
SNAP00000006004 2/11 Cross Hyb Matching Probes None
SNAP00000006006 2/11 Cross Hyb Matching Probes None
SNAP00000006011 1/11 Cross Hyb Matching Probes None
SNAP00000006013 2/11 Cross Hyb Matching Probes None
SNAP00000006015 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006018 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006020 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006021 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006023 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006024 1/11 Cross Hyb Matching Probes None
SNAP00000007231 2/11 Cross Hyb Matching Probes None
GENEFINDER00000007236 2/11 Cross Hyb Matching Probes None
SNAP00000023386 4/11 Cross Hyb Matching Probes None
GENEFINDER00000023395 4/11 Cross Hyb Matching Probes None
SNAP00000029404 2/11 Cross Hyb Matching Probes None
SNAP00000029405 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029413 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029416 1/11 Cross Hyb Matching Probes None
SNAP00000029847 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029849 2/11 Cross Hyb Matching Probes None
SNAP00000034129 1/11 Cross Hyb Matching Probes None
SNAP00000034134 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034137 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034140 1/11 Cross Hyb Matching Probes None
SNAP00000040132 3/11 Cross Hyb Matching Probes None
SNAP00000040134 5/11 Cross Hyb Matching Probes None
GENEFINDER00000040145 5/11 Cross Hyb Matching Probes None
SNAP00000041533 4/11 Cross Hyb Matching Probes None
GENEFINDER00000041543 4/11 Cross Hyb Matching Probes None
SNAP00000043472 5/11 Cross Hyb Matching Probes None
SNAP00000043475 4/11 Cross Hyb Matching Probes None
GENEFINDER00000043484 5/11 Cross Hyb Matching Probes None
GENEFINDER00000043489 4/11 Cross Hyb Matching Probes None
SNAP00000043994 2/11 Cross Hyb Matching Probes None
GENEFINDER00000044007 1/11 Cross Hyb Matching Probes None
F26G1.7 1/11 Cross Hyb Matching Probes A 
C33F10.9 1/11 Cross Hyb Matching Probes A 
R05F9.3 1/11 Cross Hyb Matching Probes R A 
R05F9.13 1/11 Cross Hyb Matching Probes A 
F59A6.8 1/11 Cross Hyb Matching Probes None
C34F11.6 1/11 Cross Hyb Matching Probes A 
C34F11.4 2/11 Cross Hyb Matching Probes A 
C09B9.6 2/11 Cross Hyb Matching Probes A 
R13H9.2 2/11 Cross Hyb Matching Probes A 
R13H9.4 1/11 Cross Hyb Matching Probes A 
Y59E9AR.7 1/11 Cross Hyb Matching Probes A 
Y59E9AR.1 1/11 Cross Hyb Matching Probes A 
F36H12.7 1/11 Cross Hyb Matching Probes A 
ZK354.5 2/11 Cross Hyb Matching Probes A 
ZK354.4 2/11 Cross Hyb Matching Probes A 
ZK354.10 2/11 Cross Hyb Matching Probes None
ZK354.11 2/11 Cross Hyb Matching Probes A 
ZK354.1 1/11 Cross Hyb Matching Probes A 
Y59H11AM.1 2/11 Cross Hyb Matching Probes A 
ZK1251.6 4/11 Cross Hyb Matching Probes A 
T13F2.10 5/11 Cross Hyb Matching Probes A 
T13F2.11 4/11 Cross Hyb Matching Probes A 
W08D2.9 2/11 Cross Hyb Matching Probes None
K07F5.1 5/11 Cross Hyb Matching Probes A 
K07F5.2 7/11 Cross Hyb Matching Probes A 
K07F5.3 7/11 Cross Hyb Matching Probes A 
F32B6.6 4/11 Cross Hyb Matching Probes A 
C04G2.3 4/11 Cross Hyb Matching Probes None
C04G2.4 5/11 Cross Hyb Matching Probes A 
K08F4.10 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9770025-9770409(+) 97.14 97.14
chrIV:9837628-9838012(+) 96.35 96.35
chrIV:9841518-9841902(+) 96.35 96.35
chrIV:10093057-10093457(+) 96.61 96.61
chrIV:9894608-9894992(+) 96.09 96.09
chrIV:10095410-10095794(+) 95.83 95.83
chrIV:5297956-5298340(+) 94.53 94.53
chrIV:5316517-5316901(+) 94.53 94.53
chrIV:9688997-9689381(+) 94.53 94.53
chrIV:5062573-5062957(+) 94.27 94.27
chrIV:5249434-5249815(+) 92.71 92.71
chrIV:5260583-5260967(+) 92.97 92.97
chrIV:10143333-10143717(-) 100.0 100.0
chrIV:9836013-9836397(-) 96.88 96.88
chrIV:9766750-9767134(-) 96.35 96.35
chrIV:5055626-5056010(-) 94.01 94.01
chrIV:5294951-5295335(-) 93.75 93.75
chrIV:5064673-5065057(-) 93.49 93.49
chrIV:5312595-5313106(-) 93.23 93.23
chrIV:5241396-5241777(-) 92.71 92.71
Public Domain and Genome References
Gene Title major sperm protein MSP-38
Gene Symbol msp-38
Ensembl K08F4.8
Entrez Gene 177887 Entrez gene
SwissProt P53020 EMBL-EBI
WormBase CE06156 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93089 Hypothetical protein K08F4.8 [Caenorhabditis elegans] ref|NP_501849.1| Major Sperm Protein family member (msp-38) [Caenorhabditis elegans] sp|P53020|MSP38_CAEEL Major sperm protein 38 (MSP) 1.0E-71
blast AAA85761 Major sperm protein protein 50 [Caenorhabditis elegans] emb|CAA94282.1| Hypothetical protein K07F5.1 [Caenorhabditis elegans] gb|AAK85493.1| Major sperm protein protein 53 [Caenorhabditis elegans] gb|AAB42254.1| Major sperm protein protein 51 [Caenorhabditis elegans] gb|AAB42255.1| Major sperm protein protein 113 [Caenorhabditis elegans] gb|AAB42253.1| Major sperm protein protein 59 [Caenorhabditis elegans] gb|AAB42256.1| Major sperm protein protein 65 [Caenorhabditis elegans] gb|AAC71087.1| Major sperm protein protein 64 [Caenorhabditis elegans] gb|AAA68711.1| Major sperm protein protein 142 [Caenorhabditis elegans] gb|AAA96204.1| Major sperm protein protein 45 [Caenorhabditis elegans] gb|AAC26926.1| Major sperm protein protein 19 [Caenorhabditis elegans] ref|NP_500773.1| Major Sperm Protein family member (msp-113) [Caenorhabditis elegans] ref|NP_500771.1| Major Sperm Protein family member (msp-51) [Caenorhabditis elegans] ref|NP_501759.1| Major Sperm Protein family member (msp-81) [Caenorhabditis elegans] ref|NP_500780.1| Major Sperm Protein family member (msp-65) [Caenorhabditis elegans] ref|NP_500778.1| Major Sperm Protein family member (msp-59) [Caenorhabditis elegans] ref|NP_500760.1| Major Sperm Protein family member (msp-19) [Caenorhabditis elegans] ref|NP_500714.1| Major Sperm Protein family member (msp-53) [Caenorhabditis elegans] ref|NP_495149.1| Major Sperm Protein family member (msp-64) [Caenorhabditis elegans] ref|NP_495144.1| Major Sperm Protein family member (msp-142) [Caenorhabditis elegans] ref|NP_494972.1| Major Sperm Protein family member (msp-50) [Caenorhabditis elegans] ref|NP_494959.1| Major Sperm Protein family member (msp-45) [Caenorhabditis elegans] ref|NP_494898.1| Major Sperm Protein family member (msp-31) [Caenorhabditis elegans] ref|NP_494865.1| Major Sperm Protein family member (msp-40) [Caenorhabditis elegans] gb|AAK31477.1| Major sperm protein protein 40 [Caenorhabditis elegans] gb|AAA83175.1| Major sperm protein protein 31 [Caenorhabditis elegans] sp|P53017|MSP19_CAEEL Major sperm protein 19/31/40/45/50/51/53/59/61/65/81/113/142 (MSP) 6.0E-70
blast CAB03362 Hypothetical protein T13F2.11 [Caenorhabditis elegans] ref|NP_501742.1| Major Sperm Protein family member (msp-78) [Caenorhabditis elegans] sp|Q94053|MSP78_CAEEL Major sperm protein 78 (MSP) 8.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.5E-32
Sequence
Target Sequence 
>C. ELEGANS:172934_X_AT
caaccgggtaccaagattgtcttcaatgctccatacgatgacaagcacaccgaccacatc
aaggtgatcaactcatcggctcgtcgtattggatatggtatcaagaccaccaatatgaag
agacttggagttgatccaccatgtggagttttcgacccaaaggaagctgtgcttcttgct
gtttcctgcgatgcttttgccttcggacaagaggataccaacaacgaccgtatcactgtt
gagtggaccaacaccccggatggcgctgccaaacaattccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCGGGTACCAAGATTGTCTTCA 254 187 49 Antisense
GATTGTCTTCAATGCTCCATACGAT 470 435 63 Antisense
CCATACGATGACAAGCACACCGACC 94 269 79 Antisense
TCAAGGTGATCAACTCATCGGCTCG 148 633 107 Antisense
ACTCATCGGCTCGTCGTATTGGATA 661 99 119 Antisense
TCCACCATGTGGAGTTTTCGACCCA 351 587 183 Antisense
AGGAAGCTGTGCTTCTTGCTGTTTC 309 55 209 Antisense
GATGCTTTTGCCTTCGGACAAGAGG 53 413 238 Antisense
TACCAACAACGACCGTATCACTGTT 387 647 264 Antisense
ACTGTTGAGTGGACCAACACCCCGG 471 97 283 Antisense
GGATGGCGCTGCCAAACAATTCCGT 390 515 306 Antisense
Sequence Source Affymetrix Proprietary Database