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[172933_x_at] serine/threonine protein phosphatase PP1

Description W09C3.6 /REP_DB=WormBase Gene ID /WP=CE14754 /TR=O02658 /GB=AAC24414.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase PP1
Cluster 6grp_total > 98      4grp_total > 32      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 20.5
(-1.1)
A 		3.9
(-3)
A 		57.4
(3)
A 		24.9
(-0.6)
A 		54
B 7.9
(-2.3)
A 		3.5
(-3)
A 		39.1
(3)
A 		8.9
(-2.1)
A 		36
C 38.3
(-1)
A 		51.3
(0.2)
A 		17.8
(-3)
A 		80.3
(3)
A 		63
avr 22.2
(-2.2) 		19.6
(-3) 		38.1
(3) 		38
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1549
1 2 3 4 5 6 range
A 27.7
(-3)
A 		42.2
(-2.9)
A 		26.9
(-3)
A 		103.1
(-2.7)
P 		970.8
(0.8)
P 		1529.9
(3)
P 		1503
B 26.7
(-2.9)
A 		8.2
(-3)
A 		8.4
(-3)
A 		147.1
(-2.5)
P 		1022.9
(0.9)
P 		1557.6
(3)
P 		1549
C 12.6
(-3)
A 		63.2
(-2.8)
A 		27.7
(-2.9)
A 		138.7
(-2.4)
P 		867.9
(0.8)
P 		1346.2
(3)
P 		1334
avr 22.3
(-3) 		37.9
(-2.9) 		21
(-3) 		129.6
(-2.6) 		953.9
(0.8) 		1477.9
(3) 		1457
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 7.4
(-0.2)
A 		0.9
(-3)
A 		15
(3)
A 		3.7
(-1.8)
A 		14
B 2.5
(-1.8)
A 		0.9
(-3)
A 		9.1
(3)
A 		1.9
(-2.3)
A 		8
C 12.7
(1.6)
A 		14.7
(3)
A 		6.2
(-3)
A 		13.5
(2.2)
A 		9
avr 7.5
(-0.4) 		5.5
(-3) 		10.1
(3) 		6.4
(-1.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 579
1 2 3 4 5 6 range
A 5.1
(-3)
A 		15
(-2.8)
A 		5.8
(-3)
A 		26.2
(-2.7)
P 		292.9
(1.7)
P 		372.5
(3)
P 		367
B 9.3
(-2.9)
A 		2.7
(-3)
A 		2.1
(-3)
A 		39
(-2.6)
P 		415.6
(1.3)
P 		580.8
(3)
P 		579
C 4.7
(-3)
A 		19.3
(-2.8)
A 		7
(-3)
A 		27.9
(-2.7)
P 		280.8
(0.7)
P 		450.7
(3)
P 		446
avr 6.4
(-3) 		12.3
(-2.9) 		5
(-3) 		31
(-2.7) 		329.8
(1.2) 		468
(3) 		463
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172933_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.890
Sequence Type Exemplar sequence
Representative Public ID W09C3.6 NCBI
Target Description W09C3.6 /REP_DB=WormBase Gene ID /WP=CE14754 /TR=O02658 /GB=AAC24414.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=serine-threonine protein phosphatase PP1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059028(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059028 NCBI Caenorhabditis elegans yeast Glc Seven-like Phosphatases family member (gsp-3) (gsp-3) mRNA, complete cds. 11/11 None
SNAP00000028186 ENSEMBL cdna:SNAP chromosome:CEL140:I:4709357:4710422:-1 11/11 None
GENEFINDER00000028196 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4709357:4710422:-1 11/11 None
W09C3.6 ENSEMBL cdna:known chromosome:CEL140:I:4709318:4710709:-1 gene:W09C3.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058836 6/11 Cross Hyb Matching Probes A 
SNAP00000013111 6/11 Cross Hyb Matching Probes None
GENEFINDER00000013126 6/11 Cross Hyb Matching Probes None
T03F1.5 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4709356-4710422(-) 100.0 100.0
chrI:3838406-3839433(-) 93.79 93.79
Public Domain and Genome References
Gene Title serine/threonine protein phosphatase PP1
Gene Symbol gsp-3
Ensembl W09C3.6
Entrez Gene 172082 Entrez gene
SwissProt O02658 EMBL-EBI
WormBase CE14754 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24414 Yeast glc seven-like phosphatases protein 3 [Caenorhabditis elegans] ref|NP_491429.1| yeast Glc Seven-like Phosphatases family member (gsp-3) [Caenorhabditis elegans] 1.0E-170
blast NP_491237 yeast Glc Seven-like Phosphatases family member (gsp-4) [Caenorhabditis elegans] gb|AAB42233.1| Yeast glc seven-like phosphatases protein 4 [Caenorhabditis elegans] 1.0E-167
blast CAE73431 Hypothetical protein CBG20874 [Caenorhabditis briggsae] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.4E-43
Sequence
Target Sequence 
>C. ELEGANS:172933_X_AT
cagagaacttcttcatgcttcgtggaaaccacgagtgcccagccatcaaccgtgtttatg
ggttctacgaggagtgcaaccgtcgttacaagtcgactcgtctctggtcaatcttccagg
acactttcaactggatgcctctctgtggactcattggttcccgcatcctttgcatgcatg
gtggtctgtccccacatcttcaaactcttgatcaacttcgccaactgccacgcccccagg
atccaccaaatccatcgatcggaatcgacttgttgtgggctgaccctgatcaatgggtga
agggatggcaggcaaatactcgtggagtctcttatgtctttggacaggatgttgttgctg
acgtttgctcgagacttgacatcgacttggttgctcgtgcacatcaagtcgttcaagacg
gctacgagttctttgcctccaagaagatggtcaccattttctcggcacctcactactgcg
gacagtttgacaattcggctgcaacaatgaaggtcgatgagaacatggtctgcactttcg
tca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAGAACTTCTTCATGCTTCGTGG 21 207 350 Antisense
AGGAGTGCAACCGTCGTTACAAGTC 279 55 419 Antisense
GTTACAAGTCGACTCGTCTCTGGTC 487 445 434 Antisense
TTTCAACTGGATGCCTCTCTGTGGA 435 673 474 Antisense
TCTCTGTGGACTCATTGGTTCCCGC 273 609 489 Antisense
AAACTCTTGATCAACTTCGCCAACT 77 129 551 Antisense
GGAATCGACTTGTTGTGGGCTGACC 206 533 610 Antisense
TCGTGGAGTCTCTTATGTCTTTGGA 84 607 669 Antisense
GTTGTTGCTGACGTTTGCTCGAGAC 135 439 700 Antisense
TGACATCGACTTGGTTGCTCGTGCA 487 571 726 Antisense
GAGAACATGGTCTGCACTTTCGTCA 616 391 868 Antisense
Sequence Source Affymetrix Proprietary Database