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[172929_x_at]

Description F16H9.1A /REP_DB=WormBase Gene ID /WP=CE03211 /TR=SW:P49808 /GB=CAA91803.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Regulator of G protein signalling domain
Cluster 6grp_high1_10_10 > 07      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_total > 06      4grp_total > 47      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 619
1 2 3 4 range
A 759.9
(3)
P 		234.1
(-2.9)
P 		228.7
(-3)
P 		244.7
(-2.8)
P 		531
B 708.4
(3)
P 		153.6
(-2.9)
P 		141
(-3)
P 		351.6
(-0.8)
P 		567
C 615.9
(3)
P 		257.8
(-2.1)
P 		192.6
(-3)
P 		191
(-3)
P 		425
avr 694.7
(3) 		215.2
(-2.7) 		187.4
(-3) 		262.4
(-2.1) 		507

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 383
1 2 3 4 5 6 range
A 372.1
(3)
P 		316
(1.9)
P 		178.5
(-0.7)
P 		178.7
(-0.7)
P 		176.9
(-0.8)
P 		60.8
(-3)
P 		311
B 365.4
(3)
P 		204.4
(-0.9)
P 		116.8
(-3)
P 		216.7
(-0.6)
P 		136.1
(-2.5)
P 		167.3
(-1.8)
P 		249
C 444.2
(3)
P 		256.4
(-0.4)
P 		206.3
(-1.3)
P 		136.1
(-2.5)
M 		217.5
(-1.1)
P 		109.9
(-3)
P 		334
avr 393.9
(3) 		258.9
(0.1) 		167.2
(-1.8) 		177.2
(-1.6) 		176.8
(-1.6) 		112.7
(-3) 		281
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 245
1 2 3 4 range
A 276.7
(3)
P 		50.8
(-2.6)
P 		59.8
(-2.4)
P 		35.8
(-3)
P 		241
B 225.9
(3)
P 		37.9
(-2.8)
P 		32.7
(-3)
P 		74.9
(-1.7)
P 		193
C 203.9
(3)
P 		74.1
(-1.5)
P 		67.1
(-1.8)
P 		32.2
(-3)
P 		172
avr 235.5
(3) 		54.3
(-2.8) 		53.2
(-2.8) 		47.6
(-3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 68.6
(0.3)
P 		112.4
(3)
P 		38.9
(-1.5)
P 		45.3
(-1.1)
P 		53.4
(-0.6)
P 		14.8
(-3)
P 		98
B 127.1
(3)
P 		68
(-0.6)
P 		28.4
(-3)
P 		57.4
(-1.2)
P 		55.3
(-1.4)
P 		62.4
(-0.9)
P 		99
C 164.6
(3)
P 		78.2
(-0.8)
P 		52.5
(-1.9)
P 		27.4
(-3)
M 		70.4
(-1.1)
P 		36.8
(-2.6)
P 		137
avr 120.1
(3) 		86.2
(0.5) 		39.9
(-2.9) 		43.4
(-2.6) 		59.7
(-1.4) 		38
(-3) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172929_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18022
Sequence Type Exemplar sequence
Representative Public ID F16H9.1A NCBI
Target Description F16H9.1A /REP_DB=WormBase Gene ID /WP=CE03211 /TR=SW:P49808 /GB=CAA91803.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Regulator of G protein signalling domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029415(9), NM_077723(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029415 NCBI Caenorhabditis elegans Regulator of G protein Signaling family member (rgs-2) (rgs-2) mRNA, complete cds. 9/11 None
NM_077723 NCBI Caenorhabditis elegans Regulator of G protein Signaling family member (rgs-2) (rgs-2) mRNA, complete cds. 11/11 A 
F16H9.1b ENSEMBL cdna:known chromosome:CEL140:X:12712571:12727532:1 gene:F16H9.1 9/11 A 
F16H9.1a ENSEMBL cdna:known chromosome:CEL140:X:12721766:12728308:1 gene:F16H9.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002359 7/11 Cross Hyb Matching Probes None
GENEFINDER00000002370 7/11 Cross Hyb Matching Probes None
GENEFINDER00000043623 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12722000-12727491(+) 100.0 100.0
Public Domain and Genome References
Ensembl F16H9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54219 Hypothetical protein F16H9.1b [Caenorhabditis elegans] emb|CAB54230.1| Hypothetical protein F16H9.1b [Caenorhabditis elegans] ref|NP_001024586.1| Regulator of G protein Signaling family member (rgs-2) [Caenorhabditis elegans] 1.0E-101
blast CAA90295 Hypothetical protein F16H9.1a [Caenorhabditis elegans] emb|CAA91803.1| Hypothetical protein F16H9.1a [Caenorhabditis elegans] ref|NP_510124.2| Regulator of G protein Signaling family member (rgs-2) [Caenorhabditis elegans] gb|AAF33782.1| RGS-2 [Caenorhabditis elegans] sp|P49808|RGS2_CAEEL Regulator of G-protein signaling rgs-2 7.0E-94
blast CAB54219 Hypothetical protein F16H9.1b [Caenorhabditis elegans] emb|CAB54230.1| Hypothetical protein F16H9.1b [Caenorhabditis elegans] ref|NP_001024586.1| Regulator of G protein Signaling family member (rgs-2) [Caenorhabditis elegans] 9.0E-84
blast CAA90295 Hypothetical protein F16H9.1a [Caenorhabditis elegans] emb|CAA91803.1| Hypothetical protein F16H9.1a [Caenorhabditis elegans] ref|NP_510124.2| Regulator of G protein Signaling family member (rgs-2) [Caenorhabditis elegans] gb|AAF33782.1| RGS-2 [Caenorhabditis elegans] sp|P49808|RGS2_CAEEL Regulator of G-protein signaling rgs-2 1.0E-83
blast CAE57222 Hypothetical protein CBG00085 [Caenorhabditis briggsae] 6.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR000342 EMBL-EBI Regulator of G protein 6.6E-57
Pfam IPR000342 EMBL-EBI Regulator of G protein 6.6E-57
Sequence
Target Sequence 
>C. ELEGANS:172929_X_AT
gacgtgtgactgtacctttatgggccaaaaacacagcggaagcgtctcggtcgaaaagaa
aaaccaggaaaacgatggcccacccacttatgaaattgttttcggatggtcgcaatcttt
tgagaacctcatgaaacaccgagctggacaaaagtactttgccgaattcttaaaaggaga
atactcagatgaaaacattcttttctggcaggcgtgtgaagagctcaaacgagagaaaaa
tgccgagaaaattgaagagaaggctcgcattatctacgaagatttcatctcgatcctttc
cccaaaagaagtttcgttagactctcgtgtccgtgaaatcgttaacaccaacatgggacg
tccatctgcctccacctttgacgaggctcaaaaccagatctacacccttatgcaaagaga
cagctacccacgattcttggcctccaacatctacaagaccgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTGTGACTGTACCTTTATGGGC 652 377 24 Antisense
AAAACACAGCGGAAGCGTCTCGGTC 615 129 51 Antisense
GGCCCACCCACTTATGAAATTGTTT 473 541 100 Antisense
AACATTCTTTTCTGGCAGGCGTGTG 105 139 217 Antisense
CGAAGATTTCATCTCGATCCTTTCC 350 253 300 Antisense
TTCGTTAGACTCTCGTGTCCGTGAA 378 693 336 Antisense
ACACCAACATGGGACGTCCATCTGC 502 109 368 Antisense
CTGCCTCCACCTTTGACGAGGCTCA 584 235 389 Antisense
CAAAACCAGATCTACACCCTTATGC 707 189 412 Antisense
CAAAGAGACAGCTACCCACGATTCT 176 193 436 Antisense
GCCTCCAACATCTACAAGACCGTGA 639 281 463 Antisense
Sequence Source Affymetrix Proprietary Database