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[172926_x_at] small histidine-alanine-rich protein precursor (SHARP)

Description T05A7.9 /REP_DB=WormBase Gene ID /WP=CE04895 /GB=AAK68882.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=small histidine-alanine-rich protein precursor (SHARP)
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 33      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 14      6grp_total > 10      4grp_total > 03      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31105
1 2 3 4 range
A 3340.6
(-2.8)
P 		2451
(-3)
P 		2313.4
(-3)
P 		27960.4
(3)
P 		25647
B 3717.6
(-2.4)
P 		2734.4
(-2.9)
P 		2607.7
(-3)
P 		13009.6
(3)
P 		10402
C 5718.1
(-2.1)
P 		1715.8
(-2.9)
P 		1261.7
(-3)
P 		32366.8
(3)
P 		31105
avr 4258.8
(-2.4) 		2300.4
(-2.9) 		2060.9
(-3) 		24445.6
(3) 		22385

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14584
1 2 3 4 5 6 range
A 3012.7
(-1.5)
P 		2578.9
(-1.8)
P 		10319.7
(3)
P 		618.1
(-3)
P 		5579.5
(0.1)
P 		702.2
(-2.9)
P 		9702
B 2785
(-0.7)
P 		4754.5
(3)
P 		3925.4
(1.5)
P 		2442.3
(-1.3)
P 		2630.8
(-0.9)
P 		1528.2
(-3)
P 		3226
C 1305
(-2.6)
P 		14901.5
(3)
P 		785.5
(-2.8)
P 		2861.6
(-2)
P 		317.6
(-3)
P 		970.9
(-2.7)
P 		14584
avr 2367.6
(-1.8) 		7411.6
(3) 		5010.2
(0.7) 		1974
(-2.1) 		2842.6
(-1.3) 		1067.1
(-3) 		6345
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5018
1 2 3 4 range
A 1216.3
(-1.8)
P 		532
(-3)
P 		604.8
(-2.9)
P 		4092.9
(3)
P 		3561
B 1185.5
(-1.4)
P 		675.3
(-2.8)
P 		604.3
(-3)
P 		2772.4
(3)
P 		2168
C 1892.8
(-1.3)
P 		493.3
(-2.9)
P 		439.7
(-3)
P 		5457.6
(3)
P 		5018
avr 1431.5
(-1.5) 		566.9
(-3) 		549.6
(-3) 		4107.6
(3) 		3558

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4444
1 2 3 4 5 6 range
A 555.4
(-1.9)
P 		917.2
(-0.8)
P 		2247.4
(3)
P 		156.8
(-3)
P 		1683.6
(1.4)
P 		171
(-3)
P 		2091
B 969
(-0.6)
P 		1582.6
(3)
P 		953.2
(-0.7)
P 		646.9
(-2.5)
P 		1068.9
(-0)
P 		569.9
(-3)
P 		1013
C 483.7
(-2.5)
P 		4546.9
(3)
P 		199.9
(-2.9)
P 		575.5
(-2.4)
P 		102.8
(-3)
P 		325
(-2.7)
P 		4444
avr 669.4
(-2.1) 		2348.9
(3) 		1133.5
(-0.7) 		459.7
(-2.7) 		951.8
(-1.2) 		355.3
(-3) 		1994
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172926_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4732
Sequence Type Exemplar sequence
Representative Public ID T05A7.9 NCBI
Target Description T05A7.9 /REP_DB=WormBase Gene ID /WP=CE04895 /GB=AAK68882.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=small histidine-alanine-rich protein precursor (SHARP)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062430(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062430 NCBI Caenorhabditis elegans T05A7.9 (T05A7.9) mRNA, complete cds. 11/11 None
SNAP00000005190 ENSEMBL cdna:SNAP chromosome:CEL140:II:4684626:4684854:-1 9/11 None
GENEFINDER00000005214 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4684483:4684854:-1 11/11 None
T05A7.9 ENSEMBL cdna:known chromosome:CEL140:II:4684483:4684854:-1 gene:T05A7.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_064837 2/11 Cross Hyb Matching Probes A 
SNAP00000010958 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029225 3/11 Cross Hyb Matching Probes None
SNAP00000022329 1/11 Cross Hyb Matching Probes None
SNAP00000017447 3/11 Cross Hyb Matching Probes None
GENEFINDER00000017471 2/11 Cross Hyb Matching Probes None
GENEFINDER00000024356 1/11 Cross Hyb Matching Probes None
SNAP00000029285 1/11 Cross Hyb Matching Probes None
SNAP00000029286 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029298 2/11 Cross Hyb Matching Probes None
SNAP00000042947 1/11 Cross Hyb Matching Probes None
GENEFINDER00000042954 1/11 Cross Hyb Matching Probes None
SNAP00000013902 1/11 Cross Hyb Matching Probes None
GENEFINDER00000013906 2/11 Cross Hyb Matching Probes None
SNAP00000013903 2/11 Cross Hyb Matching Probes None
SNAP00000011594 2/11 Cross Hyb Matching Probes None
GENEFINDER00000011601 2/11 Cross Hyb Matching Probes None
SNAP00000001448 2/11 Cross Hyb Matching Probes None
GENEFINDER00000001469 2/11 Cross Hyb Matching Probes None
SNAP00000019190 5/11 Cross Hyb Matching Probes None
GENEFINDER00000019201 5/11 Cross Hyb Matching Probes None
SNAP00000030920 1/11 Cross Hyb Matching Probes None
GENEFINDER00000030940 1/11 Cross Hyb Matching Probes None
SNAP00000037535 1/11 Cross Hyb Matching Probes None
GENEFINDER00000037541 1/11 Cross Hyb Matching Probes None
SNAP00000014726 1/11 Cross Hyb Matching Probes None
SNAP00000022903 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022909 1/11 Cross Hyb Matching Probes None
SNAP00000006574 2/11 Cross Hyb Matching Probes None
SNAP00000025925 1/11 Cross Hyb Matching Probes None
GENEFINDER00000025928 1/11 Cross Hyb Matching Probes None
GENEFINDER00000031395 1/11 Cross Hyb Matching Probes None
GENEFINDER00000039281 1/11 Cross Hyb Matching Probes None
W02B3.6 2/11 Cross Hyb Matching Probes R A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title small histidine-alanine-rich protein precursor (SHARP)
Ensembl T05A7.9
Entrez Gene 188087 Entrez gene
SwissProt Q95ZQ1 EMBL-EBI
WormBase CE04895 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494831 T05A7.9 [Caenorhabditis elegans] gb|AAK68882.1| Hypothetical protein T05A7.9 [Caenorhabditis elegans] 3.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 7.8E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.1E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.3E-4
Sequence
Target Sequence 
>C. ELEGANS:172926_X_AT
cgaagggtctcacaacgatgggtctcaccacgaagggtctcaccacgaagggtctcacca
cactgggtctcgcaacgatgggtctcaccacgaagggtctcaccacgaaaggtctcacaa
cgatgggtctcaccactaagggtctcaccacgaagggtctcacaacgatgggtctcacca
cgaagggtctcaccacgaagggtctcaccaatttcccggcaaaaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAAGGGTCTCACAACGATGGGTCT 198 251 41 Antisense
CACACTGGGTCTCGCAACGATGGGT 87 193 99 Antisense
CAACGATGGGTCTCACCACGAAGGG 103 187 113 Antisense
GAAGGGTCTCACCACGAAAGGTCTC 584 333 132 Antisense
GAAAGGTCTCACAACGATGGGTCTC 254 361 147 Antisense
AACGATGGGTCTCACCACTAAGGGT 175 139 159 Antisense
ACCACTAAGGGTCTCACCACGAAGG 384 1 172 Antisense
CTCACCACGAAGGGTCTCACAACGA 483 227 184 Antisense
TCACAACGATGGGTCTCACCACGAA 12 629 200 Antisense
TCACCACGAAGGGTCTCACCAATTT 624 625 230 Antisense
TCTCACCAATTTCCCGGCAAAAATT 251 613 243 Antisense
Sequence Source Affymetrix Proprietary Database