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[172919_x_at]

Description K01G5.2A /REP_DB=WormBase Gene ID /WP=CE16191 /TR=O17916 /GB=CAB07241.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=chromo (CHRromatin Organization MOdifier) domain
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 84      6grp_total > 68      4grp_total > 52      6grp_highest_sub > Cu      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 348
1 2 3 4 range
A 770
(3)
P 		764.4
(2.8)
P 		696.8
(1)
P 		549.9
(-3)
P 		220
B 888.5
(3)
P 		878
(2.8)
P 		738.2
(0.4)
P 		540.4
(-3)
P 		348
C 742.4
(1.1)
P 		831.5
(3)
P 		665
(-0.6)
P 		556
(-3)
P 		276
avr 800.3
(2.5) 		824.6
(3) 		700
(0.3) 		548.8
(-3) 		276

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 348
1 2 3 4 5 6 range
A 641.4
(1.8)
P 		468.4
(-3)
P 		525.6
(-1.4)
P 		496.6
(-2.2)
P 		546.1
(-0.9)
P 		686
(3)
P 		218
B 573.5
(-1.6)
P 		550.6
(-2.1)
P 		511
(-3)
P 		687.9
(0.8)
P 		606.2
(-0.9)
P 		787.6
(3)
P 		277
C 601.6
(-1.3)
P 		525.9
(-2.8)
P 		522.1
(-2.8)
P 		513.5
(-3)
P 		592.5
(-1.4)
P 		815.9
(3)
P 		302
avr 605.5
(-0.8) 		515
(-3) 		519.6
(-2.9) 		566
(-1.8) 		581.6
(-1.4) 		763.2
(3) 		248
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 280.4
(3)
P 		165.9
(-0.4)
P 		182.2
(0.1)
P 		80.5
(-3)
P 		200
B 283.3
(3)
P 		216.9
(0.6)
P 		171.1
(-1)
P 		115.2
(-3)
P 		168
C 245.8
(3)
P 		239.1
(2.7)
P 		231.8
(2.4)
P 		93.7
(-3)
P 		152
avr 269.8
(3) 		207.3
(0.8) 		195
(0.4) 		96.5
(-3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 118.2
(-2.6)
P 		166.6
(3)
P 		114.5
(-3)
P 		125.9
(-1.7)
P 		164.8
(2.7)
P 		167
(3)
P 		53
B 199.5
(-0.3)
P 		183.3
(-0.9)
P 		124.1
(-3)
P 		182.2
(-0.9)
P 		246.3
(1.3)
P 		293.7
(3)
P 		170
C 223
(1.2)
P 		160.5
(-1)
P 		132.9
(-2)
P 		103.3
(-3)
P 		191.7
(0.1)
P 		273.1
(3)
P 		170
avr 180.2
(-0.2) 		170.1
(-0.7) 		123.8
(-3) 		137.1
(-2.3) 		200.9
(0.8) 		244.6
(3) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172919_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6303
Sequence Type Exemplar sequence
Representative Public ID K01G5.2A NCBI
Target Description K01G5.2A /REP_DB=WormBase Gene ID /WP=CE16191 /TR=O17916 /GB=CAB07241.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=chromo (CHRromatin Organization MOdifier) domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027482(10), NM_001027483(10), NM_001027481(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027482 NCBI Caenorhabditis elegans HP1 Like (heterochromatin protein) family member (hpl-2) (hpl-2) mRNA, complete cds. 10/11 None
NM_001027483 NCBI Caenorhabditis elegans HP1 Like (heterochromatin protein) family member (hpl-2) (hpl-2) mRNA, complete cds. 10/11 None
NM_001027481 NCBI Caenorhabditis elegans HP1 Like (heterochromatin protein) family member (hpl-2) (hpl-2) mRNA, complete cds. 11/11 None
SNAP00000033491 ENSEMBL cdna:SNAP chromosome:CEL140:III:10752201:10755387:-1 10/11 None
GENEFINDER00000033502 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10753620:10755387:-1 11/11 None
K01G5.2b ENSEMBL cdna:known chromosome:CEL140:III:10752140:10755392:-1 gene:K01G5.2 10/11 A 
K01G5.2c ENSEMBL cdna:known chromosome:CEL140:III:10752197:10755387:-1 gene:K01G5.2 10/11 A 
K01G5.2a ENSEMBL cdna:known chromosome:CEL140:III:10753468:10755398:-1 gene:K01G5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10753615-10755383(-) 100.0 100.0
Public Domain and Genome References
Ensembl K01G5.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54267 Hypothetical protein K01G5.2c [Caenorhabditis elegans] ref|NP_001022654.1| HP1 Like (heterochromatin protein) family member (hpl-2) [Caenorhabditis elegans] 1.0E-148
blast CAB07243 Hypothetical protein K01G5.2b [Caenorhabditis elegans] ref|NP_001022653.1| HP1 Like (heterochromatin protein) family member (hpl-2) [Caenorhabditis elegans] gb|AAD21196.1| chromo-domain protein [Caenorhabditis elegans] 1.0E-146
blast CAB54267 Hypothetical protein K01G5.2c [Caenorhabditis elegans] ref|NP_001022654.1| HP1 Like (heterochromatin protein) family member (hpl-2) [Caenorhabditis elegans] 1.0E-145
blast CAB07243 Hypothetical protein K01G5.2b [Caenorhabditis elegans] ref|NP_001022653.1| HP1 Like (heterochromatin protein) family member (hpl-2) [Caenorhabditis elegans] gb|AAD21196.1| chromo-domain protein [Caenorhabditis elegans] 1.0E-145
Protein Domains
Database ID Description E-Value
Pfam IPR008251 EMBL-EBI Chromo shadow 2.1E-32
Pfam IPR000953 EMBL-EBI Chromo 2.6E-14
Pfam IPR008251 EMBL-EBI Chromo shadow 1.4E-37
Sequence
Target Sequence 
>C. ELEGANS:172919_X_AT
tacagtggcaaggattccccgagtctgactctagctgggagccgagagagaatctccagt
gcgtcgagatgttggacgagtttgagagggaattttcaaagagagagaaaccaattcgca
aacgacacagccagaagcccgaaccttccgaagatcaagcggatccagaagaggataaag
atgaaaagaaggaaacgaatcaaaatgacaaattctcactggaaggcaagcagttaaaat
gcattgtcgggctcaccaagggacctggggaacttcattttctgtgcaaattcagtgatg
acacggcacggcttcttccagcgaaggaggtgaacagtcgctatccgagccaagtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAGTGGCAAGGATTCCCCGAGTC 454 643 128 Antisense
CCGAGTCTGACTCTAGCTGGGAGCC 599 263 146 Antisense
GAGAGAGAATCTCCAGTGCGTCGAG 365 395 171 Antisense
TCGCAAACGACACAGCCAGAAGCCC 69 599 243 Antisense
AAGCCCGAACCTTCCGAAGATCAAG 462 149 262 Antisense
TAAAATGCATTGTCGGGCTCACCAA 473 639 362 Antisense
GGCTCACCAAGGGACCTGGGGAACT 200 537 377 Antisense
CTGGGGAACTTCATTTTCTGTGCAA 263 241 392 Antisense
TTCAGTGATGACACGGCACGGCTTC 608 683 418 Antisense
CACGGCTTCTTCCAGCGAAGGAGGT 475 197 434 Antisense
AACAGTCGCTATCCGAGCCAAGTTA 218 137 460 Antisense
Sequence Source Affymetrix Proprietary Database