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[172915_x_at]

Description F44G3.3 /REP_DB=WormBase Gene ID /WP=CE16035 /TR=O45519 /GB=CAB05518.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Reverse transcriptase (RNA-dependent DNA polymerase)
Cluster 6grp_total > 11      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 293
1 2 3 4 range
A 57.2
(-1.2)
A 		18.5
(-3)
A 		31.4
(-2.4)
A 		149.3
(3)
A 		131
B 12.3
(-3)
A 		13.8
(-2.8)
A 		53.6
(3)
A 		20.5
(-1.8)
A 		41
C 35.3
(-2.7)
A 		19.6
(-3)
A 		60.8
(-2.1)
A 		305.1
(3)
P 		286
avr 34.9
(-2.3) 		17.3
(-3) 		48.6
(-1.7) 		158.3
(3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 18.2
(-2.3)
A 		60.7
(3)
A 		47
(1.3)
A 		42.8
(0.7)
A 		13
(-3)
A 		15.4
(-2.7)
A 		48
B 14.7
(2.3)
A 		16.3
(3)
A 		16
(2.9)
A 		13.9
(1.9)
A 		13.4
(1.7)
A 		3.4
(-3)
A 		13
C 34.5
(-0.1)
A 		67.4
(3)
A 		17.9
(-1.6)
A 		3.4
(-3)
A 		9.8
(-2.4)
A 		5.2
(-2.8)
A 		64
avr 22.5
(-0.8) 		48.1
(3) 		27
(-0.2) 		20
(-1.2) 		12.1
(-2.4) 		8
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 20.8
(2.7)
A 		4
(-3)
A 		8.2
(-1.6)
A 		21.8
(3)
A 		18
B 3.9
(-2.7)
A 		3.4
(-3)
A 		12.4
(3)
A 		4.4
(-2.3)
A 		9
C 11.7
(-2.2)
A 		5.6
(-3)
A 		21.2
(-1)
A 		51.4
(3)
P 		46
avr 12.1
(-0.8) 		4.3
(-3) 		13.9
(-0.3) 		25.9
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3.4
(-3)
A 		21.6
(3)
A 		10.2
(-0.8)
A 		10.9
(-0.5)
A 		3.9
(-2.8)
A 		3.8
(-2.9)
A 		18
B 5.1
(2.4)
A 		5.4
(2.9)
A 		3.9
(0.7)
A 		3.7
(0.4)
A 		5.5
(3)
A 		1.3
(-3)
A 		4
C 12.8
(0.6)
A 		20.6
(3)
A 		4.6
(-1.8)
A 		0.7
(-3)
A 		3.2
(-2.2)
A 		1.8
(-2.7)
A 		20
avr 7.1
(-0.9) 		15.9
(3) 		6.2
(-1.3) 		5.1
(-1.8) 		4.2
(-2.2) 		2.3
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172915_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14744
Sequence Type Exemplar sequence
Representative Public ID F44G3.3 NCBI
Target Description F44G3.3 /REP_DB=WormBase Gene ID /WP=CE16035 /TR=O45519 /GB=CAB05518.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Reverse transcriptase (RNA-dependent DNA polymerase)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000003414 ENSEMBL cdna:SNAP chromosome:CEL140:V:16112173:16114765:1 11/11 None
GENEFINDER00000003424 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16112173:16114765:1 11/11 None
F44G3.3 ENSEMBL cdna:pseudogene chromosome:CEL140:V:16112173:16114765:1 gene:F44G3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078379 3/11 Cross Hyb Matching Probes A 
NM_077119 1/11 Cross Hyb Matching Probes A 
NM_064793 4/11 Cross Hyb Matching Probes A 
NM_071125 6/11 Cross Hyb Matching Probes None
NM_066128 3/11 Cross Hyb Matching Probes A 
NM_075970 3/11 Cross Hyb Matching Probes A 
NM_078455 4/11 Cross Hyb Matching Probes A 
NM_058672 3/11 Cross Hyb Matching Probes A 
NM_061681 3/11 Cross Hyb Matching Probes A 
NM_059054 3/11 Cross Hyb Matching Probes A 
GENEFINDER00000005898 3/11 Cross Hyb Matching Probes None
GENEFINDER00000043553 1/11 Cross Hyb Matching Probes None
SNAP00000043540 4/11 Cross Hyb Matching Probes None
SNAP00000039702 3/11 Cross Hyb Matching Probes None
GENEFINDER00000039704 3/11 Cross Hyb Matching Probes None
SNAP00000012049 3/11 Cross Hyb Matching Probes None
GENEFINDER00000012051 3/11 Cross Hyb Matching Probes None
SNAP00000043894 3/11 Cross Hyb Matching Probes None
GENEFINDER00000043904 1/11 Cross Hyb Matching Probes None
SNAP00000030989 3/11 Cross Hyb Matching Probes None
GENEFINDER00000030995 1/11 Cross Hyb Matching Probes None
SNAP00000031879 4/11 Cross Hyb Matching Probes None
GENEFINDER00000031882 4/11 Cross Hyb Matching Probes None
SNAP00000000198 4/11 Cross Hyb Matching Probes None
GENEFINDER00000000200 1/11 Cross Hyb Matching Probes None
SNAP00000006732 4/11 Cross Hyb Matching Probes None
GENEFINDER00000006742 4/11 Cross Hyb Matching Probes None
SNAP00000028592 3/11 Cross Hyb Matching Probes None
GENEFINDER00000028599 3/11 Cross Hyb Matching Probes None
SNAP00000033705 1/11 Cross Hyb Matching Probes None
GENEFINDER00000033772 1/11 Cross Hyb Matching Probes None
SNAP00000037693 1/11 Cross Hyb Matching Probes None
GENEFINDER00000037709 1/11 Cross Hyb Matching Probes None
SNAP00000039289 2/11 Cross Hyb Matching Probes None
GENEFINDER00000039297 2/11 Cross Hyb Matching Probes None
SNAP00000043497 3/11 Cross Hyb Matching Probes None
GENEFINDER00000043506 3/11 Cross Hyb Matching Probes None
SNAP00000001526 4/11 Cross Hyb Matching Probes None
GENEFINDER00000001539 4/11 Cross Hyb Matching Probes None
SNAP00000028144 6/11 Cross Hyb Matching Probes None
GENEFINDER00000028157 6/11 Cross Hyb Matching Probes None
SNAP00000032429 3/11 Cross Hyb Matching Probes None
GENEFINDER00000032435 3/11 Cross Hyb Matching Probes None
SNAP00000012632 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034063 1/11 Cross Hyb Matching Probes None
SNAP00000034055 3/11 Cross Hyb Matching Probes None
SNAP00000007929 4/11 Cross Hyb Matching Probes None
GENEFINDER00000007942 2/11 Cross Hyb Matching Probes None
GENEFINDER00000009534 4/11 Cross Hyb Matching Probes None
SNAP00000009529 4/11 Cross Hyb Matching Probes None
SNAP00000043287 3/11 Cross Hyb Matching Probes None
GENEFINDER00000043303 3/11 Cross Hyb Matching Probes None
SNAP00000003534 3/11 Cross Hyb Matching Probes None
GENEFINDER00000003544 3/11 Cross Hyb Matching Probes None
SNAP00000035247 1/11 Cross Hyb Matching Probes None
GENEFINDER00000035253 1/11 Cross Hyb Matching Probes None
SNAP00000022302 4/11 Cross Hyb Matching Probes None
GENEFINDER00000022354 2/11 Cross Hyb Matching Probes None
SNAP00000022319 1/11 Cross Hyb Matching Probes None
Y71F9AL.3 3/11 Cross Hyb Matching Probes A 
F54D7.1 3/11 Cross Hyb Matching Probes A 
C08F1.9 3/11 Cross Hyb Matching Probes A 
Y53C12A.5 1/11 Cross Hyb Matching Probes None
K10F12.5 4/11 Cross Hyb Matching Probes A 
C06E8.4 3/11 Cross Hyb Matching Probes A 
Y105C5A.7 1/11 Cross Hyb Matching Probes None
Y32G9A.9 6/11 Cross Hyb Matching Probes None
Y102A11A.4 3/11 Cross Hyb Matching Probes A 
C24A3.7 1/11 Cross Hyb Matching Probes A 
B0302.3 3/11 Cross Hyb Matching Probes A 
C33E10.4 3/11 Cross Hyb Matching Probes None
F20B4.7 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl F44G3.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T22200 hypothetical protein F44G3.3 - Caenorhabditis elegans 0.0
blast AAB71003 Hypothetical protein K10F12.5 [Caenorhabditis elegans] ref|NP_497194.1| K10F12.5 [Caenorhabditis elegans] 0.0
blast AAC72298 reverse transcriptase [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.8E-6
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 5.2E-55
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 8.8E-8
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 7.3E-37
Sequence
Target Sequence 
>C. ELEGANS:172915_X_AT
tgacgtcgacgagtacatctacctcggtcgtcaaatcaacgctcaaaacaacttgatgcc
ggaaatccaccgaagacgtcgagcagcctgggctgcattcaatggaatcaagaacaccac
cgactccatcaccgacaagaagattcgtgcgaatctgttcgactctattgtccttcccgc
tctcacctatggttcagaagcctggacattcaccaaagctctatccgaacgagtaagaat
cacacatgcctccctagaaagacggcttgtgggaatcacactcactcaacaacgagagcg
agatctccatcgagaagacattcgtacgatgtctctagttagggacccgctcaatttcgt
gaaaaaaaggaagctaggatgggctggacacgttgcgagaaggaaagacggaagatggac
cacgttgatgacagaatggcgcccatatggatggaaaaggcctgttggaaggccgccgat
gcgatggactgattcgctgcgaaaggagatcaccactcgtgacgcagacggagaagtcat
caccccatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACGTCGACGAGTACATCTACCTC 539 569 1725 Antisense
ACCTCGGTCGTCAAATCAACGCTCA 402 85 1745 Antisense
AATCTGTTCGACTCTATTGTCCTTC 294 169 1876 Antisense
CCGCTCTCACCTATGGTTCAGAAGC 272 263 1901 Antisense
GAAGCCTGGACATTCACCAAAGCTC 251 345 1921 Antisense
GATGTCTCTAGTTAGGGACCCGCTC 106 409 2052 Antisense
TAGTTAGGGACCCGCTCAATTTCGT 672 385 2060 Antisense
GCTAGGATGGGCTGGACACGTTGCG 449 299 2097 Antisense
GGCCGCCGATGCGATGGACTGATTC 87 543 2195 Antisense
TCACCACTCGTGACGCAGACGGAGA 147 625 2234 Antisense
CAGACGGAGAAGTCATCACCCCATG 486 195 2249 Antisense
Sequence Source Affymetrix Proprietary Database