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[172911_x_at] 60S ribosomal protein L29

Description B0513.3 /REP_DB=WormBase Gene ID /WP=CE15559 /GEN=rpl-29 /TR=O45226 /GB=CAB05115.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=60S ribosomal protein L29
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 19      6grp_total > 52      4grp_total > 25      6grp_highest_sub > 03      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14866
1 2 3 4 range
A 21721.8
(-3)
P 		30604.3
(0.7)
P 		28658
(-0.1)
P 		36008
(3)
P 		14286
B 23844.4
(-3)
P 		26214
(-1.1)
P 		29366.8
(1.3)
P 		31483.6
(3)
P 		7639
C 21141.7
(-3)
P 		24714.9
(-1.6)
P 		22966.9
(-2.3)
P 		35966.5
(3)
P 		14825
avr 22236
(-3) 		27177.7
(-0.6) 		26997.2
(-0.7) 		34486
(3) 		12250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7245
1 2 3 4 5 6 range
A 18655.9
(-1.3)
P 		19509.7
(-0.5)
P 		23263.2
(3)
P 		19438.3
(-0.6)
P 		16831.8
(-3)
P 		19127.5
(-0.9)
P 		6431
B 18051.4
(-1.3)
P 		20162.7
(0.4)
P 		23233.7
(3)
P 		18174
(-1.2)
P 		16484.1
(-2.6)
P 		16018.5
(-3)
P 		7215
C 17544
(-2.1)
P 		20554
(2.5)
P 		20539.4
(2.5)
P 		20845.9
(3)
P 		16978
(-3)
P 		17991.6
(-1.4)
P 		3868
avr 18083.8
(-1.6) 		20075.5
(0.6) 		22345.4
(3) 		19486.1
(-0.1) 		16764.6
(-3) 		17712.5
(-2) 		5581
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2734
1 2 3 4 range
A 7908.9
(3)
P 		6643.4
(0.1)
P 		7491.8
(2.1)
P 		5270.9
(-3)
P 		2638
B 7603.8
(3)
P 		6474.3
(-3)
P 		6805
(-1.2)
P 		6709.2
(-1.8)
P 		1130
C 6998.5
(-0.1)
P 		7105.7
(0.2)
P 		8004.7
(3)
P 		6064.5
(-3)
P 		1940
avr 7503.7
(3) 		6741.1
(-0.1) 		7433.8
(2.7) 		6014.9
(-3) 		1489

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3500
1 2 3 4 5 6 range
A 3439.1
(-3)
P 		6938.6
(3)
P 		5066.2
(-0.2)
P 		4930
(-0.4)
P 		5079.1
(-0.2)
P 		4656.9
(-0.9)
P 		3500
B 6281
(1.6)
P 		6711.3
(3)
P 		5641.8
(-0.4)
P 		4813.7
(-3)
P 		6697.3
(3)
P 		5973.2
(0.7)
P 		1898
C 6502.8
(3)
P 		6271.7
(2.4)
P 		5227.6
(-0.3)
P 		4192.1
(-3)
P 		5493.8
(0.4)
P 		6022.8
(1.8)
P 		2311
avr 5407.6
(-0.7) 		6640.5
(3) 		5311.9
(-1) 		4645.3
(-3) 		5756.7
(0.3) 		5551
(-0.3) 		1995
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172911_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9284
Sequence Type Exemplar sequence
Representative Public ID B0513.3 NCBI
Target Description B0513.3 /REP_DB=WormBase Gene ID /WP=CE15559 /GEN=rpl-29 /TR=O45226 /GB=CAB05115.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=60S ribosomal protein L29
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070270(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070270 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-29) (rpl-29) mRNA, complete cds. 11/11 None
GENEFINDER00000026165 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13882211:13882553:1 11/11 None
B0513.3.3 ENSEMBL cdna:known chromosome:CEL140:IV:13882192:13882635:1 gene:B0513.3 11/11 None
B0513.3.2 ENSEMBL cdna:known chromosome:CEL140:IV:13882192:13883042:1 gene:B0513.3 11/11 None
B0513.3.1 ENSEMBL cdna:known chromosome:CEL140:IV:13882194:13883042:1 gene:B0513.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010053 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13882216-13882559(+) 100.0 100.0
Public Domain and Genome References
Gene Title 60S ribosomal protein L29
Gene Symbol rpl-29
Ensembl B0513.3
Entrez Gene 178352 Entrez gene
SwissProt O45226 EMBL-EBI
WormBase CE15559 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05115 Hypothetical protein B0513.3 [Caenorhabditis elegans] ref|NP_502671.1| Ribosomal Protein, Large subunit family member (rpl-29) [Caenorhabditis elegans] 4.0E-29
blast CAE74611 Hypothetical protein CBG22400 [Caenorhabditis briggsae] 4.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR002673 EMBL-EBI Ribosomal L29e protein 1.4E-25
Sequence
Target Sequence 
>C. ELEGANS:172911_X_AT
atggccaagtccaagaaccacaccaatcacaaccagaacaagaaggctcaccgtaatgga
atcacgaagccaaagaagcacatcttcctctccatgaagggagtcgacgccaagttcatc
aagaacctccgtttctccagaaagaacaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCCAAGTCCAAGAACCACACCA 164 53 13 Antisense
CCACACCAATCACAACCAGAACAAG 687 275 30 Antisense
AACCAGAACAAGAAGGCTCACCGTA 390 147 43 Antisense
GAAGGCTCACCGTAATGGAATCACG 160 333 54 Antisense
GGAATCACGAAGCCAAAGAAGCACA 203 533 70 Antisense
CAAAGAAGCACATCTTCCTCTCCAT 316 193 83 Antisense
CACATCTTCCTCTCCATGAAGGGAG 79 197 91 Antisense
CCATGAAGGGAGTCGACGCCAAGTT 117 269 104 Antisense
GAGTCGACGCCAAGTTCATCAAGAA 130 401 113 Antisense
AGTTCATCAAGAACCTCCGTTTCTC 528 63 125 Antisense
CTCCGTTTCTCCAGAAAGAACAACA 513 233 139 Antisense
Sequence Source Affymetrix Proprietary Database