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[172894_x_at] retinol binding protein

Description T22G5.6 /REP_DB=WormBase Gene ID /WP=CE13992 /GEN=lbp-8 /TR=O02324 /GB=CAB03391.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=retinol binding protein
Cluster 6grp_total > 70      4grp_total > 42      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 1.4
(-2.8)
A 		12.5
(3)
A 		10.6
(2)
A 		1
(-3)
A 		12
B 3
(-2.7)
A 		43.2
(3)
A 		2.7
(-2.7)
A 		0.7
(-3)
A 		43
C 2.4
(-3)
A 		9.9
(0.1)
A 		13.2
(1.4)
A 		17.1
(3)
A 		15
avr 2.3
(-3) 		21.9
(3) 		8.8
(-1) 		6.3
(-1.8) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 2.2
(-2.9)
A 		6.4
(-2)
A 		10.8
(-1.1)
A 		30.3
(3)
A 		3.9
(-2.5)
A 		1.7
(-3)
A 		29
B 1.3
(-2.6)
A 		7.2
(0.8)
A 		10.5
(2.7)
A 		11.1
(3)
A 		3.2
(-1.5)
A 		0.6
(-3)
A 		11
C 6.3
(-0.1)
A 		1.7
(-2.5)
A 		3.3
(-1.7)
A 		12.2
(3)
A 		0.9
(-2.9)
A 		0.8
(-3)
A 		11
avr 3.3
(-2.2) 		5.1
(-1.5) 		8.2
(-0.4) 		17.9
(3) 		2.7
(-2.4) 		1
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.5
(-2.1)
A 		2.7
(2.8)
A 		2.8
(3)
A 		0.1
(-3)
A 		3
B 1
(-2.5)
A 		10.7
(3)
A 		0.6
(-2.7)
A 		0.1
(-3)
A 		11
C 0.8
(-3)
A 		2.9
(0.3)
A 		4.6
(3)
A 		2.9
(0.3)
A 		4
avr 0.8
(-3) 		5.4
(3) 		2.7
(-0.5) 		1
(-2.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.4
(-3)
A 		2.3
(-1.4)
A 		2.3
(-1.4)
A 		7.7
(3)
A 		1.2
(-2.3)
A 		0.4
(-3)
A 		7
B 0.5
(-2.3)
A 		2.4
(1.9)
A 		2.6
(2.3)
A 		2.9
(3)
A 		1.3
(-0.6)
A 		0.2
(-3)
A 		3
C 2.3
(2.7)
A 		0.5
(-2.4)
A 		0.8
(-1.6)
A 		2.4
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		2
avr 1.1
(-1.8) 		1.7
(-0.9) 		1.9
(-0.6) 		4.3
(3) 		0.9
(-2.1) 		0.3
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172894_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12579
Sequence Type Exemplar sequence
Representative Public ID T22G5.6 NCBI
Target Description T22G5.6 /REP_DB=WormBase Gene ID /WP=CE13992 /GEN=lbp-8 /TR=O02324 /GB=CAB03391.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=retinol binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074043(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074043 NCBI Caenorhabditis elegans Lipid Binding Protein family member (lbp-8) (lbp-8) mRNA, complete cds. 11/11 None
SNAP00000016898 ENSEMBL cdna:SNAP chromosome:CEL140:V:13893375:13893852:1 11/11 None
GENEFINDER00000016905 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13892549:13893852:1 11/11 None
T22G5.6 ENSEMBL cdna:known chromosome:CEL140:V:13893375:13893605:1 gene:T22G5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13893374-13893605(+) 100.0 100.0
Public Domain and Genome References
Gene Title retinol binding protein
Gene Symbol lbp-8
Ensembl T22G5.6
Entrez Gene 188761 Entrez gene
SwissProt O02324 EMBL-EBI
WormBase CE13992 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5488 binding inferred from electronic annotation QuickGO AmiGO
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE66215 Hypothetical protein CBG11457 [Caenorhabditis briggsae] 9.0E-53
blast CAB03387 Hypothetical protein T22G5.2 [Caenorhabditis elegans] ref|NP_506440.1| Lipid Binding Protein family member (lbp-7) [Caenorhabditis elegans] sp|O02323|FABP7_CAEEL Fatty acid-binding protein homolog 1.0E-52
blast CAE66215 Hypothetical protein CBG11457 [Caenorhabditis briggsae] 4.0E-52
blast CAB03387 Hypothetical protein T22G5.2 [Caenorhabditis elegans] ref|NP_506440.1| Lipid Binding Protein family member (lbp-7) [Caenorhabditis elegans] sp|O02323|FABP7_CAEEL Fatty acid-binding protein homolog 6.0E-52
blast CAB03392 Hypothetical protein T22G5.7 [Caenorhabditis elegans] ref|NP_506443.1| SaPosin-like Protein family member (spp-12) [Caenorhabditis elegans] 2.0E-49
blast CAE66214 Hypothetical protein CBG11456 [Caenorhabditis briggsae] 4.0E-43
blast CAB03391 Hypothetical protein T22G5.6 [Caenorhabditis elegans] ref|NP_506444.1| Lipid Binding Protein family member (lbp-8) [Caenorhabditis elegans] 3.0E-37
blast CAE66215 Hypothetical protein CBG11457 [Caenorhabditis briggsae] 3.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR000566 EMBL-EBI Lipocalin-related protein and Bos/Can/Equ allergen 4.8E-10
Pfam IPR000566 EMBL-EBI Lipocalin-related protein and Bos/Can/Equ allergen 5.5E-18
Pfam IPR000566 EMBL-EBI Lipocalin-related protein and Bos/Can/Equ allergen 5.5E-18
Sequence
Target Sequence 
>C. ELEGANS:172894_X_AT
ggacgatggaaactagtccattcggaaaactttgaagaatacctgaaagaaatcggagtt
ggtcttcttattcgtaaagctgcatctttaacaagtccgacattggaaattaaactagat
ggtgacacttggcatttcaatcaatactccacgtttaaaaacaacaagctcgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGATGGAAACTAGTCCATTCGG 161 523 37 Antisense
CTAGTCCATTCGGAAAACTTTGAAG 85 201 49 Antisense
GAATACCTGAAAGAAATCGGAGTTG 577 315 73 Antisense
ATCGGAGTTGGTCTTCTTATTCGTA 255 35 88 Antisense
GTCTTCTTATTCGTAAAGCTGCATC 138 469 98 Antisense
AAGCTGCATCTTTAACAAGTCCGAC 276 149 113 Antisense
GCATCTTTAACAAGTCCGACATTGG 244 309 118 Antisense
ACTAGATGGTGACACTTGGCATTTC 610 101 150 Antisense
GGTGACACTTGGCATTTCAATCAAT 303 501 157 Antisense
TTCAATCAATACTCCACGTTTAAAA 627 683 172 Antisense
CACGTTTAAAAACAACAAGCTCGCT 494 671 186 Antisense
Sequence Source Affymetrix Proprietary Database