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[172885_x_at] major sperm protein

Description C34F11.4 /REP_DB=WormBase Gene ID /WP=CE02806 /GEN=msp-50 /TR=SW:P53017 /GB=AAA85761.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=major sperm protein
Cluster 6grp_total > 99      4grp_total > 09      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 249
1 2 3 4 range
A 9.7
(-3)
A 		59
(-1.8)
A 		43.2
(-2.2)
A 		253.1
(3)
P 		243
B 45.1
(-3)
A 		55.5
(-2)
A 		67.6
(-0.8)
A 		107.3
(3)
A 		62
C 66.8
(-2.9)
A 		78.1
(-2.6)
A 		64.7
(-3)
A 		258.3
(3)
P 		194
avr 40.5
(-3) 		64.2
(-2.1) 		58.5
(-2.3) 		206.2
(3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3850
1 2 3 4 5 6 range
A 45.1
(-2.9)
A 		7
(-3)
A 		93.2
(-2.9)
A 		310
(-2.5)
P 		2731
(1.3)
P 		3824.5
(3)
P 		3818
B 24.1
(-3)
A 		89.1
(-2.9)
A 		67
(-2.9)
A 		286.2
(-2.5)
P 		3127.3
(3)
P 		3092
(2.9)
P 		3103
C 26.7
(-3)
A 		127.9
(-2.8)
A 		55.2
(-3)
A 		351.3
(-2.5)
P 		3856.6
(3)
P 		3170.6
(1.9)
P 		3830
avr 32
(-3) 		74.7
(-2.9) 		71.8
(-2.9) 		315.8
(-2.5) 		3238.3
(2.8) 		3362.4
(3) 		3330
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 3.5
(-3)
A 		12.8
(-1.3)
A 		11.3
(-1.6)
A 		37
(3)
P 		34
B 14.4
(-2.5)
A 		13.7
(-3)
A 		15.7
(-1.7)
A 		22.9
(3)
A 		9
C 22.1
(-3)
A 		22.5
(-2.9)
A 		22.5
(-2.9)
A 		43.5
(3)
P 		21
avr 13.3
(-3) 		16.3
(-2.2) 		16.5
(-2.1) 		34.5
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1268
1 2 3 4 5 6 range
A 8.3
(-3)
A 		2.5
(-3)
A 		20.3
(-2.9)
A 		78.6
(-2.5)
P 		824.1
(2.3)
P 		931.1
(3)
P 		929
B 8.4
(-3)
A 		29.7
(-2.9)
A 		16.3
(-3)
A 		75.8
(-2.7)
P 		1270.6
(3)
P 		1153
(2.4)
P 		1262
C 9.9
(-3)
A 		39
(-2.9)
A 		14
(-3)
A 		70.7
(-2.7)
P 		1248
(3)
P 		1061.4
(2.1)
P 		1238
avr 8.9
(-3) 		23.7
(-2.9) 		16.9
(-3) 		75
(-2.6) 		1114.2
(3) 		1048.5
(2.6) 		1105
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172885_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4620
Sequence Type Exemplar sequence
Representative Public ID C34F11.4 NCBI
Target Description C34F11.4 /REP_DB=WormBase Gene ID /WP=CE02806 /GEN=msp-50 /TR=SW:P53017 /GB=AAA85761.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=major sperm protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062571(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062571 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-50) (msp-50) mRNA, complete cds. 11/11 None
SNAP00000021329 ENSEMBL cdna:SNAP chromosome:CEL140:II:5199777:5200160:1 11/11 None
GENEFINDER00000021346 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5199777:5201408:1 11/11 None
C34F11.4 ENSEMBL cdna:known chromosome:CEL140:II:5199767:5200160:1 gene:C34F11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062487 2/11 Cross Hyb Matching Probes A 
NM_069433 2/11 Cross Hyb Matching Probes A 
NM_062497 2/11 Cross Hyb Matching Probes A 
NM_068370 1/11 Cross Hyb Matching Probes A 
NM_069448 1/11 Cross Hyb Matching Probes A 
NM_068310 1/11 Cross Hyb Matching Probes A 
NM_068312 1/11 Cross Hyb Matching Probes A 
NM_068313 1/11 Cross Hyb Matching Probes A 
NM_069063 1/11 Cross Hyb Matching Probes A 
NM_062569 4/11 Cross Hyb Matching Probes A 
NM_062505 1/11 Cross Hyb Matching Probes A 
NM_068359 2/11 Cross Hyb Matching Probes A 
NM_068377 1/11 Cross Hyb Matching Probes A 
NM_068379 1/11 Cross Hyb Matching Probes A 
NM_062490 1/11 Cross Hyb Matching Probes A 
NM_062500 1/11 Cross Hyb Matching Probes A 
NM_069339 1/11 Cross Hyb Matching Probes A 
NM_069358 1/11 Cross Hyb Matching Probes A 
NM_069359 1/11 Cross Hyb Matching Probes A 
NM_069361 1/11 Cross Hyb Matching Probes A 
NM_069380 1/11 Cross Hyb Matching Probes A 
NM_062457 1/11 Cross Hyb Matching Probes A 
NM_062464 1/11 Cross Hyb Matching Probes A 
NM_068372 1/11 Cross Hyb Matching Probes A 
SNAP00000000807 1/11 Cross Hyb Matching Probes None
GENEFINDER00000000821 1/11 Cross Hyb Matching Probes None
SNAP00000016470 1/11 Cross Hyb Matching Probes None
GENEFINDER00000016484 1/11 Cross Hyb Matching Probes None
SNAP00000021327 4/11 Cross Hyb Matching Probes None
GENEFINDER00000021348 4/11 Cross Hyb Matching Probes None
SNAP00000034943 1/11 Cross Hyb Matching Probes None
SNAP00000034948 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034961 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034965 1/11 Cross Hyb Matching Probes None
SNAP00000043868 2/11 Cross Hyb Matching Probes None
SNAP00000043869 1/11 Cross Hyb Matching Probes None
SNAP00000043876 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043883 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043888 2/11 Cross Hyb Matching Probes None
SNAP00000002639 2/11 Cross Hyb Matching Probes None
SNAP00000002641 2/11 Cross Hyb Matching Probes None
GENEFINDER00000002656 1/11 Cross Hyb Matching Probes None
GENEFINDER00000002661 2/11 Cross Hyb Matching Probes None
SNAP00000004243 1/11 Cross Hyb Matching Probes None
SNAP00000004244 1/11 Cross Hyb Matching Probes None
SNAP00000004246 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004263 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004265 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004273 1/11 Cross Hyb Matching Probes None
SNAP00000005864 1/11 Cross Hyb Matching Probes None
GENEFINDER00000005869 1/11 Cross Hyb Matching Probes None
SNAP00000006004 1/11 Cross Hyb Matching Probes None
SNAP00000006006 1/11 Cross Hyb Matching Probes None
SNAP00000006011 1/11 Cross Hyb Matching Probes None
SNAP00000006013 1/11 Cross Hyb Matching Probes None
SNAP00000006015 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006018 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006020 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006021 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006023 1/11 Cross Hyb Matching Probes None
GENEFINDER00000006024 1/11 Cross Hyb Matching Probes None
SNAP00000007231 1/11 Cross Hyb Matching Probes None
GENEFINDER00000007236 1/11 Cross Hyb Matching Probes None
SNAP00000029404 1/11 Cross Hyb Matching Probes None
SNAP00000029405 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029413 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029416 1/11 Cross Hyb Matching Probes None
SNAP00000029847 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029849 1/11 Cross Hyb Matching Probes None
SNAP00000040132 1/11 Cross Hyb Matching Probes None
SNAP00000040134 2/11 Cross Hyb Matching Probes None
GENEFINDER00000040145 2/11 Cross Hyb Matching Probes None
SNAP00000041533 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041543 1/11 Cross Hyb Matching Probes None
SNAP00000043472 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043484 1/11 Cross Hyb Matching Probes None
SNAP00000043994 1/11 Cross Hyb Matching Probes None
GENEFINDER00000044007 1/11 Cross Hyb Matching Probes None
F26G1.7 1/11 Cross Hyb Matching Probes A 
C33F10.9 1/11 Cross Hyb Matching Probes A 
R05F9.8 2/11 Cross Hyb Matching Probes A 
R05F9.3 1/11 Cross Hyb Matching Probes R A 
R05F9.13 2/11 Cross Hyb Matching Probes A 
ZK546.6 1/11 Cross Hyb Matching Probes A 
ZK546.3 1/11 Cross Hyb Matching Probes A 
F59A6.8 1/11 Cross Hyb Matching Probes None
C34F11.6 4/11 Cross Hyb Matching Probes A 
C09B9.6 1/11 Cross Hyb Matching Probes A 
R13H9.2 1/11 Cross Hyb Matching Probes A 
R13H9.4 1/11 Cross Hyb Matching Probes A 
F36H12.7 2/11 Cross Hyb Matching Probes A 
F36H12.6 1/11 Cross Hyb Matching Probes None
ZK354.5 1/11 Cross Hyb Matching Probes A 
ZK354.4 1/11 Cross Hyb Matching Probes A 
ZK354.10 1/11 Cross Hyb Matching Probes None
ZK354.11 1/11 Cross Hyb Matching Probes A 
ZK354.1 1/11 Cross Hyb Matching Probes A 
Y59H11AM.1 1/11 Cross Hyb Matching Probes A 
T13F2.10 1/11 Cross Hyb Matching Probes A 
W08D2.9 1/11 Cross Hyb Matching Probes None
K07F5.1 1/11 Cross Hyb Matching Probes A 
K07F5.2 1/11 Cross Hyb Matching Probes A 
K07F5.3 1/11 Cross Hyb Matching Probes A 
F32B6.6 1/11 Cross Hyb Matching Probes A 
C04G2.3 1/11 Cross Hyb Matching Probes None
C04G2.4 2/11 Cross Hyb Matching Probes A 
K08F4.8 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5062573-5062957(+) 91.67 91.67
chrIV:5260583-5260967(+) 91.67 91.67
chrIV:5297956-5298340(+) 91.67 91.67
chrIV:5316517-5316901(+) 91.67 91.67
chrII:5199774-5200158(+) 100.0 100.0
chrII:5194343-5194727(+) 94.79 94.79
chrII:4933009-4933393(+) 93.49 93.49
chrII:4825399-4825783(+) 92.19 92.19
chrII:4787144-4899172(+) 92.97 92.97
chrII:4939884-4940265(+) 91.67 91.67
chrIV:5294951-5295335(-) 91.93 91.93
chrIV:5055626-5056010(-) 91.41 91.41
chrIV:5064673-5065057(-) 91.41 91.41
chrIV:5312722-5313106(-) 91.41 91.41
chrIV:9766750-9767134(-) 91.41 91.41
chrII:4916162-4916546(-) 94.27 94.27
chrII:4892294-4892678(-) 92.97 92.97
chrII:5156679-5157062(-) 91.93 91.93
chrII:5809908-5810292(-) 91.67 91.67
chrII:5012855-5013236(-) 90.89 90.89
Public Domain and Genome References
Gene Title major sperm protein
Gene Symbol msp-50
Ensembl C34F11.4
Entrez Gene 173890 Entrez gene
SwissProt P53017 EMBL-EBI
WormBase CE02806 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA85761 Major sperm protein protein 50 [Caenorhabditis elegans] emb|CAA94282.1| Hypothetical protein K07F5.1 [Caenorhabditis elegans] gb|AAK85493.1| Major sperm protein protein 53 [Caenorhabditis elegans] gb|AAB42254.1| Major sperm protein protein 51 [Caenorhabditis elegans] gb|AAB42255.1| Major sperm protein protein 113 [Caenorhabditis elegans] gb|AAB42253.1| Major sperm protein protein 59 [Caenorhabditis elegans] gb|AAB42256.1| Major sperm protein protein 65 [Caenorhabditis elegans] gb|AAC71087.1| Major sperm protein protein 64 [Caenorhabditis elegans] gb|AAA68711.1| Major sperm protein protein 142 [Caenorhabditis elegans] gb|AAA96204.1| Major sperm protein protein 45 [Caenorhabditis elegans] gb|AAC26926.1| Major sperm protein protein 19 [Caenorhabditis elegans] ref|NP_500773.1| Major Sperm Protein family member (msp-113) [Caenorhabditis elegans] ref|NP_500771.1| Major Sperm Protein family member (msp-51) [Caenorhabditis elegans] ref|NP_501759.1| Major Sperm Protein family member (msp-81) [Caenorhabditis elegans] ref|NP_500780.1| Major Sperm Protein family member (msp-65) [Caenorhabditis elegans] ref|NP_500778.1| Major Sperm Protein family member (msp-59) [Caenorhabditis elegans] ref|NP_500760.1| Major Sperm Protein family member (msp-19) [Caenorhabditis elegans] ref|NP_500714.1| Major Sperm Protein family member (msp-53) [Caenorhabditis elegans] ref|NP_495149.1| Major Sperm Protein family member (msp-64) [Caenorhabditis elegans] ref|NP_495144.1| Major Sperm Protein family member (msp-142) [Caenorhabditis elegans] ref|NP_494972.1| Major Sperm Protein family member (msp-50) [Caenorhabditis elegans] ref|NP_494959.1| Major Sperm Protein family member (msp-45) [Caenorhabditis elegans] ref|NP_494898.1| Major Sperm Protein family member (msp-31) [Caenorhabditis elegans] ref|NP_494865.1| Major Sperm Protein family member (msp-40) [Caenorhabditis elegans] gb|AAK31477.1| Major sperm protein protein 40 [Caenorhabditis elegans] gb|AAA83175.1| Major sperm protein protein 31 [Caenorhabditis elegans] sp|P53017|MSP19_CAEEL Major sperm protein 19/31/40/45/50/51/53/59/61/65/81/113/142 (MSP) 1.0E-71
blast CAB03362 Hypothetical protein T13F2.11 [Caenorhabditis elegans] ref|NP_501742.1| Major Sperm Protein family member (msp-78) [Caenorhabditis elegans] sp|Q94053|MSP78_CAEEL Major sperm protein 78 (MSP) 2.0E-71
blast AAK68539 Hypothetical protein Y59H11AM.1 [Caenorhabditis elegans] ref|NP_501464.1| Y59H11AM.1 [Caenorhabditis elegans] 3.0E-71
blast AAA85761 Major sperm protein protein 50 [Caenorhabditis elegans] emb|CAA94282.1| Hypothetical protein K07F5.1 [Caenorhabditis elegans] gb|AAK85493.1| Major sperm protein protein 53 [Caenorhabditis elegans] gb|AAB42254.1| Major sperm protein protein 51 [Caenorhabditis elegans] gb|AAB42255.1| Major sperm protein protein 113 [Caenorhabditis elegans] gb|AAB42253.1| Major sperm protein protein 59 [Caenorhabditis elegans] gb|AAB42256.1| Major sperm protein protein 65 [Caenorhabditis elegans] gb|AAC71087.1| Major sperm protein protein 64 [Caenorhabditis elegans] gb|AAA68711.1| Major sperm protein protein 142 [Caenorhabditis elegans] gb|AAA96204.1| Major sperm protein protein 45 [Caenorhabditis elegans] gb|AAC26926.1| Major sperm protein protein 19 [Caenorhabditis elegans] ref|NP_500773.1| Major Sperm Protein family member (msp-113) [Caenorhabditis elegans] ref|NP_500771.1| Major Sperm Protein family member (msp-51) [Caenorhabditis elegans] ref|NP_501759.1| Major Sperm Protein family member (msp-81) [Caenorhabditis elegans] ref|NP_500780.1| Major Sperm Protein family member (msp-65) [Caenorhabditis elegans] ref|NP_500778.1| Major Sperm Protein family member (msp-59) [Caenorhabditis elegans] ref|NP_500760.1| Major Sperm Protein family member (msp-19) [Caenorhabditis elegans] ref|NP_500714.1| Major Sperm Protein family member (msp-53) [Caenorhabditis elegans] ref|NP_495149.1| Major Sperm Protein family member (msp-64) [Caenorhabditis elegans] ref|NP_495144.1| Major Sperm Protein family member (msp-142) [Caenorhabditis elegans] ref|NP_494972.1| Major Sperm Protein family member (msp-50) [Caenorhabditis elegans] ref|NP_494959.1| Major Sperm Protein family member (msp-45) [Caenorhabditis elegans] ref|NP_494898.1| Major Sperm Protein family member (msp-31) [Caenorhabditis elegans] ref|NP_494865.1| Major Sperm Protein family member (msp-40) [Caenorhabditis elegans] gb|AAK31477.1| Major sperm protein protein 40 [Caenorhabditis elegans] gb|AAA83175.1| Major sperm protein protein 31 [Caenorhabditis elegans] sp|P53017|MSP19_CAEEL Major sperm protein 19/31/40/45/50/51/53/59/61/65/81/113/142 (MSP) 2.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 4.7E-35
Sequence
Target Sequence 
>C. ELEGANS:172885_X_AT
gacccagccgggtacgaagatcgtgtttaatgcaccatacgatgacaagcacacttatca
cattaaagtgatcaactcatctgctcgccgtattggatacggtatcaagaccaccaacat
gaagagacttggagttgatccaccatgtggagtactcgacccaaaggaagctgttcttct
ggctgtttcctgtgatgcctttgcattcggacaggaggacactaacaatgaccgtatcac
tgttgagtggaccaacaccccggatggagctgccaagcaattccgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCCAGCCGGGTACGAAGATCGTG 580 381 45 Antisense
AGATCGTGTTTAATGCACCATACGA 128 67 62 Antisense
TAAAGTGATCAACTCATCTGCTCGC 541 641 108 Antisense
TCATCTGCTCGCCGTATTGGATACG 187 621 121 Antisense
TCCACCATGTGGAGTACTCGACCCA 318 587 183 Antisense
AGGAAGCTGTTCTTCTGGCTGTTTC 443 55 209 Antisense
TTCTGGCTGTTTCCTGTGATGCCTT 240 695 221 Antisense
GATGCCTTTGCATTCGGACAGGAGG 632 413 238 Antisense
AGGACACTAACAATGACCGTATCAC 33 55 260 Antisense
ACTGTTGAGTGGACCAACACCCCGG 486 97 283 Antisense
GATGGAGCTGCCAAGCAATTCCGTC 557 407 307 Antisense
Sequence Source Affymetrix Proprietary Database