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[172875_x_at]

Description F58A4.5 /REP_DB=WormBase Gene ID /WP=CE00221 /TR=SW:P34472 /GB=CAA80162.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Reverse transcriptase
Cluster 6grp_total > 30      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 18
(-2.6)
A 		11.9
(-3)
A 		25.5
(-2.1)
A 		101.5
(3)
A 		90
B 82.3
(3)
A 		38.4
(-0.4)
A 		4.6
(-3)
A 		53.5
(0.8)
A 		78
C 70.5
(-0.5)
A 		22.6
(-2.3)
A 		5.2
(-3)
A 		164.5
(3)
A 		159
avr 56.9
(-0.1) 		24.3
(-2.2) 		11.8
(-3) 		106.5
(3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 11.3
(-3)
A 		84.4
(3)
A 		53.6
(0.5)
A 		40.8
(-0.6)
A 		40
(-0.6)
A 		52.3
(0.4)
A 		73
B 62.2
(3)
A 		24.1
(-3)
A 		59.6
(2.6)
A 		40.4
(-0.4)
A 		30.9
(-1.9)
A 		31.3
(-1.9)
A 		38
C 66.8
(1.8)
A 		81.4
(3)
A 		69
(2)
A 		61
(1.4)
A 		6.4
(-3)
A 		46.4
(0.2)
A 		75
avr 46.8
(0.4) 		63.3
(3) 		60.7
(2.6) 		47.4
(0.5) 		25.8
(-3) 		43.3
(-0.2) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 6.6
(-1)
A 		2.6
(-3)
A 		6.7
(-1)
A 		14.9
(3)
A 		12
B 26.2
(3)
A 		9.5
(-1)
A 		1.1
(-3)
A 		11.4
(-0.5)
A 		25
C 23.3
(2)
A 		6.5
(-1.9)
A 		1.8
(-3)
A 		27.7
(3)
A 		26
avr 18.7
(3) 		6.2
(-1.8) 		3.2
(-3) 		18
(2.7) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 2.1
(-3)
A 		30
(3)
A 		11.7
(-0.9)
A 		10.3
(-1.2)
A 		12.1
(-0.8)
A 		12.7
(-0.7)
A 		28
B 21.6
(3)
A 		8
(-3)
A 		14.5
(-0.1)
A 		10.7
(-1.8)
A 		12.6
(-1)
A 		11.7
(-1.4)
A 		14
C 24.8
(3)
A 		24.8
(3)
A 		17.6
(1.1)
A 		12.3
(-0.3)
A 		2.1
(-3)
A 		15.5
(0.5)
A 		23
avr 16.2
(0.7) 		20.9
(3) 		14.6
(-0.2) 		11.1
(-1.9) 		8.9
(-3) 		13.3
(-0.8) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172875_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6734
Sequence Type Exemplar sequence
Representative Public ID F58A4.5 NCBI
Target Description F58A4.5 /REP_DB=WormBase Gene ID /WP=CE00221 /TR=SW:P34472 /GB=CAA80162.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066724
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000012190 ENSEMBL cdna:SNAP chromosome:CEL140:III:9603014:9604164:-1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062283 3/11 Cross Hyb Matching Probes A 
NM_061646 1/11 Cross Hyb Matching Probes A 
NM_066724 7/11 Cross Hyb Matching Probes A 
GENEFINDER00000012210 7/11 Cross Hyb Matching Probes None
F58E1.1 1/11 Cross Hyb Matching Probes A 
F53C3.9 3/11 Cross Hyb Matching Probes A 
F58A4.5 7/11 Cross Hyb Matching Probes A 
ZK488.3 2/11 Cross Hyb Matching Probes None
ZK218.10 1/11 Cross Hyb Matching Probes None
F59A1.5 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9603009-9608579(-) 64.9 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80162 Hypothetical protein F58A4.5 [Caenorhabditis elegans] ref|NP_499125.2| F58A4.5 [Caenorhabditis elegans] sp|P34472|YMH5_CAEEL Hypothetical C-type lectin protein F58A4.5 precursor 1.0E-79
blast NP_494684 F53C3.9 [Caenorhabditis elegans] 6.0E-10
blast F88996 protein C17B7.6 [imported] - Caenorhabditis elegans 6.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 2.6E-5
Sequence
Target Sequence 
>C. ELEGANS:172875_X_AT
atagacttcttaccggttctactcatttctctaaattaactcagtttgtcaagttctcta
attccaataggagacccatgattctggttaggaaagacacatgcacctctcatttctttg
ccaaatccattcctatttggaacaatcttgtcaaaaatataccgagaatcgaccaatcga
agaagttcagtgaagctcgcgaagtttgcaaagttgagaactcatacgtagcatccgtgc
aaaatgaaggagaagctcgattcgtttcagctcttgtacaaaccgagaagaactatactg
tagacgaacagacatggattggatatgttaaatatgatcgagattttggatgggaagatg
gaaataagggattacaattcgatccatggacggagaagatgccaagacagaaaaagtgca
ctgtgttcactgggaacgaaatccacgagaattgtcgaagtcagttccgatttgtaagcg
tcgattgtaataagactcaacgctctgtactttgctcaaaacctccgatgaaaaatggaa
ctccgttcgtctacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAGACTTCTTACCGGTTCTACTCA 598 21 3095 Antisense
CAGTTTGTCAAGTTCTCTAATTCCA 46 207 3136 Antisense
TAGGAAAGACACATGCACCTCTCAT 574 653 3183 Antisense
TTCTTTGCCAAATCCATTCCTATTT 355 689 3208 Antisense
GAACTCATACGTAGCATCCGTGCAA 681 349 3312 Antisense
TCGATTCGTTTCAGCTCTTGTACAA 292 603 3351 Antisense
AGTGCACTGTGTTCACTGGGAACGA 34 61 3509 Antisense
AAGTCAGTTCCGATTTGTAAGCGTC 201 157 3552 Antisense
TAAGACTCAACGCTCTGTACTTTGC 418 635 3585 Antisense
GTACTTTGCTCAAAACCTCCGATGA 183 459 3601 Antisense
AAATGGAACTCCGTTCGTCTACAAG 327 121 3627 Antisense
Sequence Source Affymetrix Proprietary Database