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[172872_x_at] blt101 protein-barley

Description T23F2.3 /REP_DB=WormBase Gene ID /WP=CE04998 /TR=SW:Q22700 /GB=AAA80385.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=blt101 protein-barley
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 39      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 01      6grp_total > 28      4grp_total > 47      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1362
1 2 3 4 range
A 2435.9
(3)
P 		1104.4
(-3)
P 		1362.4
(-1.8)
P 		1574.6
(-0.9)
P 		1332
B 2465.9
(3)
P 		1445.7
(-3)
P 		1641.2
(-1.9)
P 		1486.8
(-2.8)
P 		1020
C 2327.1
(3)
P 		1781.6
(0)
P 		1220
(-3)
P 		1558.8
(-1.2)
P 		1107
avr 2409.6
(3) 		1443.9
(-2.8) 		1407.9
(-3) 		1540.1
(-2.2) 		1002

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1526
1 2 3 4 5 6 range
A 2857.3
(3)
P 		2111.1
(-0.1)
P 		1408.4
(-3)
P 		1717.6
(-1.7)
P 		1953.3
(-0.7)
P 		1986.3
(-0.6)
P 		1449
B 2578.2
(3)
P 		1331.8
(-3)
P 		1573.7
(-1.8)
P 		1547.8
(-2)
P 		1888.3
(-0.3)
P 		1682.3
(-1.3)
P 		1246
C 2849.8
(3)
P 		1440.7
(-3)
P 		1655.6
(-2.1)
P 		1441.5
(-3)
P 		1945.7
(-0.8)
P 		2018.6
(-0.5)
P 		1409
avr 2761.8
(3) 		1627.9
(-2.6) 		1545.9
(-3) 		1569
(-2.9) 		1929.1
(-1.1) 		1895.7
(-1.3) 		1216
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 656
1 2 3 4 range
A 886.9
(3)
P 		239.7
(-2.9)
P 		356.2
(-1.9)
P 		230.5
(-3)
P 		656
B 786.4
(3)
P 		357.1
(-2.5)
P 		380.3
(-2.2)
P 		316.8
(-3)
P 		470
C 770.3
(3)
P 		512.2
(-0.1)
P 		425.2
(-1.1)
P 		262.8
(-3)
P 		508
avr 814.5
(3) 		369.7
(-1.9) 		387.2
(-1.7) 		270
(-3) 		545

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 766
1 2 3 4 5 6 range
A 526.7
(-0)
P 		750.8
(3)
P 		306.7
(-3)
P 		435.6
(-1.3)
P 		589.4
(0.8)
P 		483.6
(-0.6)
P 		444
B 897.1
(3)
P 		443.3
(-2.3)
P 		382.1
(-3)
P 		410
(-2.7)
P 		767.2
(1.5)
P 		627.3
(-0.1)
P 		515
C 1056.3
(3)
P 		439.6
(-1.8)
P 		421.4
(-2)
P 		289.9
(-3)
P 		629.6
(-0.3)
P 		675.7
(0)
P 		766
avr 826.7
(3) 		544.6
(-0.7) 		370.1
(-3) 		378.5
(-2.9) 		662.1
(0.8) 		595.5
(-0) 		457
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172872_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16938
Sequence Type Exemplar sequence
Representative Public ID T23F2.3 NCBI
Target Description T23F2.3 /REP_DB=WormBase Gene ID /WP=CE04998 /TR=SW:Q22700 /GB=AAA80385.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=blt101 protein-barley
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076533(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076533 NCBI Caenorhabditis elegans T23F2.3 (T23F2.3) mRNA, complete cds. 11/11 None
SNAP00000015216 ENSEMBL cdna:SNAP chromosome:CEL140:X:5512046:5512265:-1 11/11 None
GENEFINDER00000015219 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5512046:5512265:-1 11/11 None
T23F2.3 ENSEMBL cdna:known chromosome:CEL140:X:5511606:5512288:-1 gene:T23F2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5512045-5512265(-) 100.0 100.0
Public Domain and Genome References
Gene Title blt101 protein-barley
Ensembl T23F2.3
Entrez Gene 188805 Entrez gene
SwissProt Q22700 EMBL-EBI
WormBase CE04998 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA80385 Hypothetical protein T23F2.3 [Caenorhabditis elegans] ref|NP_508934.1| T23F2.3 [Caenorhabditis elegans] sp|Q22700|YCU3_CAEEL Hypothetical UPF0057 protein T23F2.3 in chromosome X 2.0E-27
blast CAE68836 Hypothetical protein CBG14797 [Caenorhabditis briggsae] emb|CAE68761.1| Hypothetical protein CBG14696 [Caenorhabditis briggsae] 3.0E-27
blast CAE70481 Hypothetical protein CBG17074 [Caenorhabditis briggsae] 5.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR000612 EMBL-EBI Protein of unknown function UPF0057 6.9E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508934.1 1 34-56
T23F2.3 1 34-56
SNAP00000015216 1 34-56
GENEFINDER00000015219 1 34-56
Sequence
Target Sequence 
>C. ELEGANS:172872_X_AT
ctgcaccgacattccaaagttcatctgcgccgttcttctcccaccaatcggagtttttct
ggagaagggctgtgactaccatctcgccatctgcattctgctcaccatcctgggatacat
tccaggcatcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCACCGACATTCCAAAGTTCATC 404 237 24 Antisense
CGACATTCCAAAGTTCATCTGCGCC 452 251 30 Antisense
TCTTCTCCCACCAATCGGAGTTTTT 327 617 57 Antisense
TTCTCCCACCAATCGGAGTTTTTCT 459 689 59 Antisense
CCCACCAATCGGAGTTTTTCTGGAG 473 257 63 Antisense
TTTTCTGGAGAAGGGCTGTGACTAC 453 675 78 Antisense
GAGAAGGGCTGTGACTACCATCTCG 583 391 85 Antisense
TCTGCTCACCATCCTGGGATACATT 347 609 120 Antisense
GCTCACCATCCTGGGATACATTCCA 356 301 123 Antisense
ACCATCCTGGGATACATTCCAGGCA 486 85 127 Antisense
CCTGGGATACATTCCAGGCATCATC 576 265 132 Antisense
Sequence Source Affymetrix Proprietary Database