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[172868_x_at] Neuropeptide anthorfamide

Description C24A3.1 /REP_DB=WormBase Gene ID /WP=CE04058 /TR=Q18126 /GB=AAA81461.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Neuropeptide anthorfamide
Cluster 6grp_total > 01      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 2.8
(-2.8)
A 		2
(-2.9)
A 		1.5
(-3)
A 		40.1
(3)
A 		39
B 14.5
(0.2)
A 		21.7
(3)
A 		6.1
(-3)
A 		15.7
(0.7)
A 		16
C 0.8
(-3)
A 		1.1
(-2.5)
A 		4
(2.2)
A 		4.5
(3)
A 		4
avr 6
(-2.2) 		8.3
(-1.4) 		3.9
(-3) 		20.1
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 6.4
(-1.5)
A 		2.4
(-2.5)
A 		16
(1.1)
A 		0.5
(-3)
A 		23.4
(3)
A 		0.6
(-3)
A 		23
B 8.8
(-0.6)
A 		18.9
(3)
A 		1.9
(-3)
A 		2
(-3)
A 		3
(-2.6)
A 		2.5
(-2.8)
A 		17
C 0.8
(-2.9)
A 		9.8
(0.8)
A 		1.7
(-2.5)
A 		0.8
(-2.9)
A 		0.6
(-3)
A 		15.1
(3)
A 		15
avr 5.3
(-0.3) 		10.4
(3) 		6.5
(0.5) 		1.1
(-3) 		9
(2.1) 		6.1
(0.2) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1
(-2.3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		5.9
(3)
A 		6
B 4.6
(1.8)
A 		5.4
(3)
A 		1.4
(-3)
A 		3.3
(-0.2)
A 		4
C 0.3
(-3)
A 		0.3
(-3)
A 		1.4
(3)
A 		0.8
(-0.3)
A 		1
avr 2
(-0.5) 		2
(-0.5) 		1.1
(-3) 		3.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.2
(-2.1)
A 		0.9
(-2.3)
A 		3.5
(-0.1)
A 		0.1
(-3)
A 		7.1
(3)
A 		0.2
(-2.9)
A 		7
B 3
(-0.4)
A 		6.3
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1.2
(-2.3)
A 		0.9
(-2.6)
A 		6
C 0.3
(-2.9)
A 		3
(0.4)
A 		0.4
(-2.8)
A 		0.2
(-3)
A 		0.2
(-3)
A 		5.1
(3)
A 		5
avr 1.5
(-0.7) 		3.4
(3) 		1.5
(-0.7) 		0.3
(-3) 		2.8
(1.8) 		2.1
(0.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172868_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16524
Sequence Type Exemplar sequence
Representative Public ID C24A3.1 NCBI
Target Description C24A3.1 /REP_DB=WormBase Gene ID /WP=CE04058 /TR=Q18126 /GB=AAA81461.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Neuropeptide anthorfamide
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077120(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077120 NCBI Caenorhabditis elegans C24A3.1 (C24A3.1) mRNA, complete cds. 11/11 A 
C24A3.1 ENSEMBL cdna:known chromosome:CEL140:X:9002417:9008212:1 gene:C24A3.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070640 1/11 Cross Hyb Matching Probes A 
NM_061393 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000015491 1/11 Cross Hyb Matching Probes None
GENEFINDER00000042962 7/11 Cross Hyb Matching Probes None
GENEFINDER00000022380 1/11 Cross Hyb Matching Probes None
GENEFINDER00000038830 1/11 Cross Hyb Matching Probes None
GENEFINDER00000003373 1/11 Cross Hyb Matching Probes None
GENEFINDER00000014744 2/11 Cross Hyb Matching Probes None
SNAP00000029283 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029295 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043146 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043152 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034929 2/11 Cross Hyb Matching Probes None
GENEFINDER00000004189 1/11 Cross Hyb Matching Probes None
GENEFINDER00000018437 2/11 Cross Hyb Matching Probes None
GENEFINDER00000030461 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004836 2/11 Cross Hyb Matching Probes None
GENEFINDER00000014734 2/11 Cross Hyb Matching Probes None
GENEFINDER00000016904 2/11 Cross Hyb Matching Probes None
GENEFINDER00000035347 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006585 1/11 Cross Hyb Matching Probes None
T02H6.3 1/11 Cross Hyb Matching Probes A 
Y116A8C.41 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9002415-9006283(+) 74.05 74.05
Public Domain and Genome References
Gene Title Neuropeptide anthorfamide
Ensembl C24A3.1
Entrez Gene 182826 Entrez gene
SwissProt Q18126 EMBL-EBI
WormBase CE04058 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81461 Hypothetical protein C24A3.1 [Caenorhabditis elegans] ref|NP_509521.1| C24A3.1 [Caenorhabditis elegans] 0.0
blast CAE57308 Hypothetical protein CBG00230 [Caenorhabditis briggsae] 0.0
blast T29578 hypothetical protein M03A1.5 - Caenorhabditis elegans 2.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 3.5E-9
Sequence
Target Sequence 
>C. ELEGANS:172868_X_AT
ggcattgcgtttttgttttcttttgagctttgtgattaaacttaataaaatttttaaatt
acaatttcccgttttttatccttctctaaaaaccaaccttctggaaaatttgagaaaatt
ctggaatgttccagaaccttctggaaaatttgagaaaattctggaatgttccagaacctt
ctggaaaattcgagaaaattctggaatgttccagaaccttctggaaaatccgagaaaatt
ctggaatgttccagaaccttctggaaaattcgagaaaattctggaatgttccagaacctt
ctggaaaatccgagaaaattctggaatgttccagaaccttctggaaaatttgagaaaatg
ctggaatgttccagaaccttctggaaaatttgagaaaattctggaatgttccagaacctt
ctggaaaattcgagaaaattctggaatgttccagaaccttctggaaaatttgagaaaatg
ctggaatgttccagaatcttctggaaaattcgagaaaattcgtggtgagacccttcgtgg
tgagacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATTGCGTTTTTGTTTTCTTTTG 589 537 1434 Antisense
GTTTTCTTTTGAGCTTTGTGATTAA 176 449 1448 Antisense
CAGAACCTTCTGGAAAATTCGAGAA 648 203 1605 Antisense
CCAGAACCTTCTGGAAAATCCGAGA 213 273 1644 Antisense
CAGAACCTTCTGGAAAATCCGAGAA 651 203 1725 Antisense
TCTGGAATGTTCCAGAACCTTCTGG 41 607 1753 Antisense
GCTGGAATGTTCCAGAACCTTCTGG 225 295 1793 Antisense
CTGGAATGTTCCAGAACCTTCTGGA 517 239 1834 Antisense
GCTGGAATGTTCCAGAATCTTCTGG 224 295 1913 Antisense
GAAAATTCGTGGTGAGACCCTTCGT 488 347 1947 Antisense
TGGTGAGACCCTTCGTGGTGAGACC 534 551 1956 Antisense
Sequence Source Affymetrix Proprietary Database