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[172860_x_at] --- /// histone H2A

Description F35H10.1 /REP_DB=WormBase Gene ID /WP=CE04501 /GEN=his-30 /TR=SW:P09588 /GB=AAA81686.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=histone H2A
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 19      4grp_high_8_8 > 55      6grp_highest_nonorm > 95      6grp_total > 97      4grp_total > 48      6grp_highest_sub > In      6grp_cgc > 69      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 826
1 2 3 4 range
A 517
(-3)
P 		857.4
(-0.5)
P 		1340.6
(3)
P 		528.9
(-2.9)
P 		824
B 515.1
(-3)
P 		974.4
(1.7)
P 		1106
(3)
P 		593.4
(-2.2)
P 		591
C 604.1
(-2.3)
P 		700.4
(-1.2)
P 		1093.3
(3)
P 		537.7
(-3)
P 		556
avr 545.4
(-3) 		844.1
(-0.2) 		1180
(3) 		553.3
(-2.9) 		635

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 803
1 2 3 4 5 6 range
A 598.2
(-0.7)
P 		386.4
(-3)
P 		694
(0.4)
P 		645.8
(-0.1)
P 		834.4
(2)
P 		928.8
(3)
P 		542
B 716.9
(-1.1)
P 		491.4
(-3)
P 		654.9
(-1.6)
P 		1003.7
(1.4)
P 		913.8
(0.6)
P 		1189.3
(3)
P 		698
C 522.5
(-2)
P 		922.6
(1.6)
P 		602.4
(-1.3)
P 		415.1
(-3)
P 		1001.6
(2.3)
P 		1075.1
(3)
P 		660
avr 612.5
(-2.8) 		600.1
(-3) 		650.4
(-2.3) 		688.2
(-1.9) 		916.6
(1.1) 		1064.4
(3) 		464
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 304
1 2 3 4 range
A 188.2
(-0.6)
P 		186.1
(-0.6)
P 		350.5
(3)
P 		77.4
(-3)
P 		273
B 164.3
(-1.3)
P 		240.6
(2.3)
P 		256.3
(3)
P 		126.5
(-3)
P 		130
C 200
(-0.7)
P 		201.4
(-0.7)
P 		381
(3)
P 		90.7
(-3)
P 		290
avr 184.2
(-0.8) 		209.4
(-0.1) 		329.3
(3) 		98.2
(-3) 		231

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 360
1 2 3 4 5 6 range
A 110.3
(-3)
P 		137.4
(-1.9)
P 		151.1
(-1.3)
P 		163.8
(-0.7)
P 		251.8
(3)
P 		226.1
(1.9)
P 		142
B 249.4
(-1.1)
P 		163.6
(-2.9)
P 		159
(-3)
P 		265.8
(-0.7)
P 		371.3
(1.5)
P 		443.5
(3)
P 		285
C 193.7
(-0.6)
P 		281.5
(1.3)
P 		153.3
(-1.5)
P 		83.5
(-3)
P 		324.1
(2.2)
P 		359.9
(3)
P 		276
avr 184.5
(-2) 		194.2
(-1.7) 		154.5
(-3) 		171
(-2.5) 		315.7
(2.1) 		343.2
(3) 		189
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172860_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8602
Sequence Type Exemplar sequence
Representative Public ID F35H10.1 NCBI
Target Description F35H10.1 /REP_DB=WormBase Gene ID /WP=CE04501 /GEN=his-30 /TR=SW:P09588 /GB=AAA81686.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=histone H2A
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069003(11), NM_069007(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069003 NCBI Caenorhabditis elegans HIStone family member (his-30) (his-30) mRNA, complete cds. 11/11 None
NM_069007 NCBI Caenorhabditis elegans HIStone family member (his-33) (his-33) mRNA, complete cds. 11/11 None
SNAP00000000481 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8335317:8335700:-1 11/11 None
GENEFINDER00000000494 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8335317:8335700:-1 11/11 None
SNAP00000039431 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8331648:8332031:1 11/11 None
GENEFINDER00000039433 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8331648:8332031:1 11/11 None
F35H10.1 ENSEMBL cdna:known chromosome:CEL140:IV:8331648:8332031:1 gene:F35H10.1 11/11 None
F17E9.13 ENSEMBL cdna:known chromosome:CEL140:IV:8335317:8335700:-1 gene:F17E9.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072876 1/11 Cross Hyb Matching Probes A B 
NM_072892 1/11 Cross Hyb Matching Probes A B 
NM_072797 2/11 Cross Hyb Matching Probes A B 
NM_068800 3/11 Cross Hyb Matching Probes A B 
NM_069749 5/11 Cross Hyb Matching Probes A B 
NM_073062 1/11 Cross Hyb Matching Probes A 
NM_064486 2/11 Cross Hyb Matching Probes A B 
NM_064490 2/11 Cross Hyb Matching Probes A B 
NM_064497 2/11 Cross Hyb Matching Probes A B 
NM_072879 1/11 Cross Hyb Matching Probes A B 
NM_074631 2/11 Cross Hyb Matching Probes A B 
NM_060241 1/11 Cross Hyb Matching Probes A B 
NM_069730 5/11 Cross Hyb Matching Probes A B 
NM_069740 5/11 Cross Hyb Matching Probes A B 
NM_072895 1/11 Cross Hyb Matching Probes A B 
SNAP00000036752 1/11 Cross Hyb Matching Probes None
GENEFINDER00000036755 1/11 Cross Hyb Matching Probes None
SNAP00000009812 2/11 Cross Hyb Matching Probes None
SNAP00000009816 2/11 Cross Hyb Matching Probes None
GENEFINDER00000009836 2/11 Cross Hyb Matching Probes None
GENEFINDER00000009839 2/11 Cross Hyb Matching Probes None
SNAP00000034713 2/11 Cross Hyb Matching Probes None
GENEFINDER00000034721 2/11 Cross Hyb Matching Probes None
SNAP00000002624 5/11 Cross Hyb Matching Probes None
GENEFINDER00000002630 5/11 Cross Hyb Matching Probes None
SNAP00000005171 3/11 Cross Hyb Matching Probes None
GENEFINDER00000005180 3/11 Cross Hyb Matching Probes None
SNAP00000035837 5/11 Cross Hyb Matching Probes None
GENEFINDER00000035847 5/11 Cross Hyb Matching Probes None
SNAP00000036324 5/11 Cross Hyb Matching Probes None
GENEFINDER00000036332 5/11 Cross Hyb Matching Probes None
SNAP00000009316 1/11 Cross Hyb Matching Probes None
GENEFINDER00000009334 1/11 Cross Hyb Matching Probes None
SNAP00000015093 1/11 Cross Hyb Matching Probes None
SNAP00000015096 1/11 Cross Hyb Matching Probes None
GENEFINDER00000015145 1/11 Cross Hyb Matching Probes None
GENEFINDER00000015151 1/11 Cross Hyb Matching Probes None
SNAP00000018184 1/11 Cross Hyb Matching Probes None
SNAP00000018187 1/11 Cross Hyb Matching Probes None
GENEFINDER00000018197 1/11 Cross Hyb Matching Probes None
GENEFINDER00000018200 1/11 Cross Hyb Matching Probes None
SNAP00000027915 2/11 Cross Hyb Matching Probes None
GENEFINDER00000027922 2/11 Cross Hyb Matching Probes None
SNAP00000030772 2/11 Cross Hyb Matching Probes None
GENEFINDER00000030788 2/11 Cross Hyb Matching Probes None
T23D8.6 1/11 Cross Hyb Matching Probes A B 
ZK131.10 2/11 Cross Hyb Matching Probes A B 
ZK131.6 2/11 Cross Hyb Matching Probes A B 
F08G2.2 2/11 Cross Hyb Matching Probes A B 
F55G1.10 3/11 Cross Hyb Matching Probes A 
B0035.7 5/11 Cross Hyb Matching Probes A B 
F54E12.5 5/11 Cross Hyb Matching Probes A B 
H02I12.7 5/11 Cross Hyb Matching Probes A B 
F45F2.4 2/11 Cross Hyb Matching Probes A B 
F07B7.10 1/11 Cross Hyb Matching Probes A B 
F07B7.3 1/11 Cross Hyb Matching Probes A B 
K06C4.3 1/11 Cross Hyb Matching Probes A B 
K06C4.11 1/11 Cross Hyb Matching Probes A B 
C50F4.13.1 1/11 Cross Hyb Matching Probes A 
C50F4.13.2 1/11 Cross Hyb Matching Probes A 
C50F4.13.3 1/11 Cross Hyb Matching Probes A 
T10C6.12 2/11 Cross Hyb Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9997183-9997567(+) 92.45 92.45
chrII:13827219-13827602(+) 91.93 91.93
chrIV:8331653-8332037(+) 100.0 100.0
chrIV:11401068-11401452(+) 94.53 94.53
chrIV:11340388-11340772(+) 94.53 94.53
chrV:8535968-8536351(+) 91.67 91.67
chrV:8898352-8898735(+) 91.15 91.15
chrV:8856257-8856640(+) 91.15 91.15
chrII:13817653-13818037(-) 92.45 92.45
chrII:13821092-13821475(-) 91.93 91.93
chrIV:8335322-8335706(-) 100.0 100.0
chrIV:11324032-11324416(-) 94.53 94.53
chrIV:7485823-7486207(-) 94.53 94.53
chrV:8894471-8894854(-) 91.15 91.15
chrV:8852376-8852759(-) 91.15 91.15
Public Domain and Genome References
Gene Title
histone H2A
Gene Symbol his-33
his-30
Ensembl F35H10.1
F17E9.13
Entrez Gene 191676 Entrez gene
191678 Entrez gene
SwissProt P09588 EMBL-EBI
WormBase CE04501 Wormbase
CE04501 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:251011_AT histone H2A, putative at
ATH1-121501:251011_AT histone H2A, putative at
CANINE_2:CFAAFFX.17979.1.S1_AT similar to histone 2, H2ac cfa
CANINE_2:CFAAFFX.17979.1.S1_AT similar to histone 2, H2ac cfa
MOUSE430A_2:1418366_AT histone 2, H2ac mm
MOE430A:1418366_AT histone 2, H2ac mm
MOUSE430_2:1418366_AT histone 2, H2ac mm
MOE430A:1418367_X_AT histone 2, H2ac mm
MOUSE430A_2:1418367_X_AT histone 2, H2ac mm
MOUSE430_2:1418367_X_AT histone 2, H2ac mm
MOUSE430A_2:1418366_AT histone 2, H2ac mm
MOE430A:1418366_AT histone 2, H2ac mm
MOUSE430_2:1418366_AT histone 2, H2ac mm
MOE430A:1418367_X_AT histone 2, H2ac mm
MOUSE430A_2:1418367_X_AT histone 2, H2ac mm
MOUSE430_2:1418367_X_AT histone 2, H2ac mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6334 nucleosome assembly inferred from electronic annotation QuickGO AmiGO
7001 chromosome organization and biogenesis (sensu Eukaryota) inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
786 nucleosome inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE60212 Hypothetical protein CBG03776 [Caenorhabditis briggsae] 9.0E-42
blast CAB05838 Hypothetical protein ZK131.10 [Caenorhabditis elegans] emb|CAB05836.1| Hypothetical protein ZK131.6 [Caenorhabditis elegans] emb|CAB03399.1| Hypothetical protein T23D8.6 [Caenorhabditis elegans] emb|CAA97414.1| Hypothetical protein B0035.7 [Caenorhabditis elegans] emb|CAB07656.1| Hypothetical protein T10C6.12 [Caenorhabditis elegans] emb|CAB07221.1| Hypothetical protein H02I12.7 [Caenorhabditis elegans] emb|CAB05212.1| Hypothetical protein F54E12.5 [Caenorhabditis elegans] emb|CAB04056.1| Hypothetical protein F08G2.2 [Caenorhabditis elegans] gb|AAC05100.1| Histone protein 33 [Caenorhabditis elegans] gb|AAK84512.1| Histone protein 53 [Caenorhabditis elegans] gb|AAK84506.1| Histone protein 51 [Caenorhabditis elegans] gb|AAF98219.1| Histone protein 21 [Caenorhabditis elegans] gb|AAF98222.1| Histone protein 19 [Caenorhabditis elegans] emb|CAA33641.1| histone protein [Caenorhabditis elegans] gb|AAB00647.1| Histone protein 61 [Caenorhabditis elegans] gb|AAA81686.1| Histone protein 30 [Caenorhabditis elegans] gb|AAC48024.1| Histone protein 7 [Caenorhabditis elegans] ref|NP_505296.1| HIStone family member (his-19) [Caenorhabditis elegans] ref|NP_501408.1| HIStone family member (his-33) [Caenorhabditis elegans] ref|NP_501404.1| HIStone family member (his-30) [Caenorhabditis elegans] ref|NP_505198.1| HIStone family member (his-7) [Caenorhabditis elegans] ref|NP_502150.1| HIStone family member (his-65) [Caenorhabditis elegans] ref|NP_505280.1| HIStone family member (his-53) [Caenorhabditis elegans] ref|NP_507032.1| HIStone family member (his-3) [Caenorhabditis elegans] ref|NP_505293.1| HIStone family member (his-21) [Caenorhabditis elegans] ref|NP_505277.1| HIStone family member (his-51) [Caenorhabditis elegans] ref|NP_502141.1| HIStone family member (his-57) [Caenorhabditis elegans] ref|NP_502131.1| HIStone family member (his-47) [Caenorhabditis elegans] ref|NP_501201.1| F55G1.10 [Caenorhabditis elegans] ref|NP_496898.1| HIStone family member (his-43) [Caenorhabditis elegans] ref|NP_496891.1| HIStone family member (his-12) [Caenorhabditis elegans] ref|NP_496887.1| HIStone family member (his-16) [Caenorhabditis elegans] ref|NP_492642.1| HIStone family member (his-68) [Caenorhabditis elegans] sp|P09588|H2A_CAEEL Histone H2A emb|CAE62045.1| Hypothetical protein CBG06061 [Caenorhabditis briggsae] emb|CAE61892.1| Hypothetical protein CBG05883 [Caenorhabditis briggsae] emb|CAE61866.1| Hypothetical protein CBG05844 [Caenorhabditis briggsae] emb|CAE75451.1| Hypothetical protein CBG23445 [Caenorhabditis briggsae] emb|CAE75446.1| Hypothetical protein CBG23440 [Caenorhabditis briggsae] emb|CAE75442.1| Hypothetical protein CBG23436 [Caenorhabditis briggsae] emb|CAE65734.1| Hypothetical protein CBG10817 [Caenorhabditis briggsae] emb|CAE58377.1| Hypothetical protein CBG01506 [Caenorhabditis briggsae] 1.0E-41
Protein Domains
Database ID Description E-Value
Pfam IPR007125 EMBL-EBI Histone core 3.6E-55
Sequence
Target Sequence 
>C. ELEGANS:172860_X_AT
gaggaaaggccaagtcacgctcatcaagagctggacttcaattcccagtcggtcgtcttc
accgtattctccgtaaaggaaactatgctcaacgtgtcggagctggagctccagtttact
tggccgctgttcttgaatacctcgctgctgaggttctcgagttggcaggtaacgctgctc
gtgacaacaagaagactcgtattgccccaagacatcttcaacttgctgtccgaaatgacg
aggagctcaacaagcttttggctggagtgactattgctcaaggaggagttcttccaaaca
tccaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGAAAGGCCAAGTCACGCTCATC 403 403 50 Antisense
AGCTGGACTTCAATTCCCAGTCGGT 360 81 78 Antisense
TCTTCACCGTATTCTCCGTAAAGGA 164 617 105 Antisense
AGGAAACTATGCTCAACGTGTCGGA 507 55 126 Antisense
AGCTGGAGCTCCAGTTTACTTGGCC 267 81 150 Antisense
TACTTGGCCGCTGTTCTTGAATACC 669 643 166 Antisense
TCGCTGCTGAGGTTCTCGAGTTGGC 378 597 191 Antisense
GTTGGCAGGTAACGCTGCTCGTGAC 100 437 210 Antisense
CGTATTGCCCCAAGACATCTTCAAC 619 245 247 Antisense
ACATCTTCAACTTGCTGTCCGAAAT 105 107 261 Antisense
GAGGAGTTCTTCCAAACATCCAAGC 74 405 332 Antisense
Sequence Source Affymetrix Proprietary Database