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[172859_x_at] Protein-tyrosine phosphatase

Description C07E3.4 /REP_DB=WormBase Gene ID /WP=CE02120 /TR=Q17787 /GB=CAA90095.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Protein-tyrosine phosphatase
Cluster 6grp_total > 89      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 37.4
(-0.2)
A 		30.8
(-0.7)
A 		3.5
(-3)
A 		75.3
(3)
A 		72
B 77.1
(3)
A 		48.4
(0.6)
A 		5.9
(-3)
A 		61.3
(1.7)
A 		71
C 39
(3)
A 		10.9
(-3)
A 		10.9
(-3)
A 		36.1
(2.4)
A 		28
avr 51.2
(2.2) 		30
(-0.3) 		6.8
(-3) 		57.6
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 61.2
(-0.5)
A 		25.7
(-2.3)
A 		16.9
(-2.7)
A 		11.7
(-3)
A 		95.3
(1.2)
A 		130.2
(3)
A 		119
B 25.1
(-1.9)
A 		12.7
(-2.7)
A 		7.6
(-3)
A 		45.4
(-0.7)
A 		81.6
(1.6)
A 		104.5
(3)
P 		97
C 41.5
(-1.1)
A 		63.5
(0.1)
A 		29.3
(-1.8)
A 		6.9
(-3)
A 		116.1
(3)
A 		113.1
(2.8)
P 		109
avr 42.6
(-1.5) 		34
(-2) 		17.9
(-3) 		21.3
(-2.8) 		97.7
(1.9) 		115.9
(3) 		98
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 13.6
(3)
A 		6.7
(-0.3)
A 		0.9
(-3)
A 		11
(1.8)
A 		13
B 24.6
(3)
A 		12
(-0.3)
A 		1.4
(-3)
A 		13.1
(0)
A 		23
C 12.9
(3)
A 		3.1
(-3)
A 		3.8
(-2.6)
A 		6.1
(-1.2)
A 		10
avr 17
(3) 		7.3
(-0.9) 		2
(-3) 		10.1
(0.2) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 11.3
(-1.3)
A 		9.1
(-1.7)
A 		3.7
(-2.9)
A 		3
(-3)
A 		28.7
(2.4)
A 		31.7
(3)
A 		29
B 8.7
(-1.9)
A 		4.2
(-2.6)
A 		1.8
(-3)
A 		12
(-1.4)
A 		33.1
(2)
A 		39
(3)
P 		37
C 15.4
(-0.7)
A 		19.4
(-0)
A 		7.4
(-2)
A 		1.4
(-3)
A 		37.6
(3)
A 		37.8
(3)
P 		36
avr 11.8
(-1.6) 		10.9
(-1.8) 		4.3
(-3) 		5.5
(-2.8) 		33.1
(2.4) 		36.2
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172859_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3528
Sequence Type Exemplar sequence
Representative Public ID C07E3.4 NCBI
Target Description C07E3.4 /REP_DB=WormBase Gene ID /WP=CE02120 /TR=Q17787 /GB=CAA90095.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063830(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063830 NCBI Caenorhabditis elegans C07E3.4 (C07E3.4) mRNA, complete cds. 11/11 None
SNAP00000023201 ENSEMBL cdna:SNAP chromosome:CEL140:II:10360781:10362825:1 11/11 None
GENEFINDER00000023214 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10360781:10362825:1 11/11 None
C07E3.4 ENSEMBL cdna:known chromosome:CEL140:II:10360781:10362825:1 gene:C07E3.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068930 8/11 Cross Hyb Matching Probes A 
NM_001027863 7/11 Cross Hyb Matching Probes None
SNAP00000009364 7/11 Cross Hyb Matching Probes None
GENEFINDER00000009369 7/11 Cross Hyb Matching Probes None
SNAP00000044151 8/11 Cross Hyb Matching Probes None
GENEFINDER00000044161 8/11 Cross Hyb Matching Probes None
ZK783.5 7/11 Cross Hyb Matching Probes None
F57H12.5 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10360777-10362822(+) 90.17 100.0
chrIV:7967446-7969514(+) 89.61 98.26
Public Domain and Genome References
Gene Title Protein-tyrosine phosphatase
Ensembl C07E3.4
Entrez Gene 182369 Entrez gene
SwissProt Q17787 EMBL-EBI
WormBase CE02120 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90095 Hypothetical protein C07E3.4 [Caenorhabditis elegans] ref|NP_496231.1| C07E3.4 [Caenorhabditis elegans] 0.0
blast AAC02601 Hypothetical protein F57H12.5 [Caenorhabditis elegans] ref|NP_501331.1| F57H12.5 [Caenorhabditis elegans] 0.0
blast CAE59434 Hypothetical protein CBG02807 [Caenorhabditis briggsae] 1.0E-140
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.1E-49
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.0E-49
Sequence
Target Sequence 
>C. ELEGANS:172859_X_AT
ttgtctacttgatggtcccggatgacaagctgaagaacaccacgacttctttgttcaacg
acgagaatggtggctatcaatacactggaaagatgtttatcaacaatcggcgtgccgacg
tttctggagatccaaaggaatatacgattgaagtattgcccgaaggaaattcagattctg
tcatatgccaggttcatcatcatgctccatggaagcatctacagcaaccaccaaaaactc
ttccgatcatcaaaatgattcaccaatttctttcggagaagcaggtgcaaaacgctggag
tctgcgtggtcagcttgttcggatgcggtcgtgcgtgcagcttcattggtgctctctatg
caatcaaccagctcaataatggaattgagcccaatatttgcgagatcatgaagaatatca
aacagcagcgtccaggaggagtcgaatcttttgctcaatgcgctagtatctatgcaattg
tgtttgactacattgcgcgcaaacgtggcggaaagaaggctcccgtaaacaaggacatca
atcgattcattgatgagctcgccgagatctccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTCTACTTGATGGTCCCGGATGA 681 689 1001 Antisense
AACACCACGACTTCTTTGTTCAACG 27 137 1036 Antisense
TGTTTATCAACAATCGGCGTGCCGA 247 561 1094 Antisense
CCAGGTTCATCATCATGCTCCATGG 134 273 1188 Antisense
GAAGCATCTACAGCAACCACCAAAA 611 341 1212 Antisense
AACCACCAAAAACTCTTCCGATCAT 41 147 1226 Antisense
ATGATTCACCAATTTCTTTCGGAGA 116 47 1255 Antisense
TCTGCGTGGTCAGCTTGTTCGGATG 458 609 1301 Antisense
GGTGCTCTCTATGCAATCAACCAGC 532 499 1348 Antisense
GTCGAATCTTTTGCTCAATGCGCTA 274 475 1441 Antisense
ATTGATGAGCTCGCCGAGATCTCCC 331 5 1549 Antisense
Sequence Source Affymetrix Proprietary Database