[Home] | [Total List]

[172858_x_at] S. muris microneme antigen

Description C53C11.4 /REP_DB=WormBase Gene ID /WP=CE04267 /TR=P91183 /GB=AAB42309.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=S. muris microneme antigen
Cluster 6grp_total > 20      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 884
1 2 3 4 range
A 26.5
(-3)
A 		23.7
(-3)
A 		65.5
(-2.7)
A 		894.9
(3)
P 		871
B 145
(3)
A 		28.1
(-2.2)
A 		10.6
(-3)
A 		142.5
(2.9)
P 		134
C 115.1
(-2.2)
A 		83.2
(-2.6)
A 		41.6
(-3)
A 		616.3
(3)
P 		575
avr 95.5
(-2.3) 		45
(-2.9) 		39.2
(-3) 		551.2
(3) 		512

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 75.1
(0.7)
A 		82.8
(1.1)
A 		120.4
(3)
P 		2.3
(-3)
A 		17.9
(-2.2)
A 		41
(-1)
A 		118
B 2.3
(-3)
A 		137.6
(3)
A 		95.3
(1.1)
A 		52.8
(-0.8)
A 		99.3
(1.3)
A 		42.7
(-1.2)
A 		135
C 39.1
(-1.5)
A 		144.4
(3)
P 		88.2
(0.6)
A 		97.8
(1)
A 		2.7
(-3)
A 		35
(-1.6)
A 		142
avr 38.8
(-3) 		121.6
(3) 		101.3
(1.5) 		51
(-2.1) 		40
(-2.9) 		39.6
(-2.9) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 9.6
(-2.8)
A 		5.1
(-3)
A 		17.1
(-2.4)
A 		131
(3)
P 		126
B 46.2
(3)
A 		6.9
(-2.4)
A 		2.4
(-3)
A 		30.4
(0.8)
P 		44
C 38.1
(-1.4)
A 		23.9
(-2.4)
A 		14.5
(-3)
A 		103.9
(3)
P 		89
avr 31.3
(-1.4) 		12
(-2.9) 		11.3
(-3) 		88.4
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 13.8
(-0.3)
A 		29.5
(3)
A 		26.2
(2.3)
P 		0.6
(-3)
A 		5.4
(-2)
A 		10
(-1)
A 		29
B 0.8
(-3)
A 		45.8
(3)
A 		23.1
(-0)
A 		14
(-1.2)
A 		40.3
(2.3)
A 		15.9
(-1)
A 		45
C 14.5
(-1.1)
A 		44.1
(3)
P 		22.4
(-0)
A 		19.7
(-0.4)
A 		0.9
(-3)
A 		11.7
(-1.5)
A 		43
avr 9.7
(-3) 		39.8
(3) 		23.9
(-0.2) 		11.4
(-2.7) 		15.5
(-1.8) 		12.5
(-2.4) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172858_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17793
Sequence Type Exemplar sequence
Representative Public ID C53C11.4 NCBI
Target Description C53C11.4 /REP_DB=WormBase Gene ID /WP=CE04267 /TR=P91183 /GB=AAB42309.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=S. muris microneme antigen
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078408(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078408 NCBI Caenorhabditis elegans C53C11.4 (C53C11.4) mRNA, complete cds. 11/11 None
GENEFINDER00000024789 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:421323:427340:-1 9/11 None
C53C11.4 ENSEMBL cdna:known chromosome:CEL140:X:17310819:17311124:1 gene:C53C11.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070640 2/11 Cross Hyb Matching Probes A 
NM_075710 3/11 Cross Hyb Matching Probes None
NM_073039 6/11 Cross Hyb Matching Probes A 
NM_061393 2/11 Cross Hyb Matching Probes A 
GENEFINDER00000015491 2/11 Cross Hyb Matching Probes None
GENEFINDER00000022380 2/11 Cross Hyb Matching Probes None
GENEFINDER00000038830 2/11 Cross Hyb Matching Probes None
GENEFINDER00000003373 2/11 Cross Hyb Matching Probes None
GENEFINDER00000014744 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021686 8/11 Cross Hyb Matching Probes None
GENEFINDER00000021882 7/11 Cross Hyb Matching Probes None
GENEFINDER00000029295 3/11 Cross Hyb Matching Probes None
GENEFINDER00000043146 2/11 Cross Hyb Matching Probes None
GENEFINDER00000043152 2/11 Cross Hyb Matching Probes None
GENEFINDER00000034929 8/11 Cross Hyb Matching Probes None
GENEFINDER00000004189 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006188 7/11 Cross Hyb Matching Probes None
GENEFINDER00000011916 4/11 Cross Hyb Matching Probes None
GENEFINDER00000012659 4/11 Cross Hyb Matching Probes None
GENEFINDER00000018437 3/11 Cross Hyb Matching Probes None
GENEFINDER00000019681 7/11 Cross Hyb Matching Probes None
GENEFINDER00000021403 7/11 Cross Hyb Matching Probes None
GENEFINDER00000021407 7/11 Cross Hyb Matching Probes None
GENEFINDER00000021411 7/11 Cross Hyb Matching Probes None
GENEFINDER00000024954 3/11 Cross Hyb Matching Probes None
GENEFINDER00000026636 4/11 Cross Hyb Matching Probes None
GENEFINDER00000030461 7/11 Cross Hyb Matching Probes None
GENEFINDER00000033792 7/11 Cross Hyb Matching Probes None
GENEFINDER00000004836 2/11 Cross Hyb Matching Probes None
GENEFINDER00000005827 5/11 Cross Hyb Matching Probes None
GENEFINDER00000014734 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029502 1/11 Cross Hyb Matching Probes None
GENEFINDER00000035347 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006585 4/11 Cross Hyb Matching Probes None
GENEFINDER00000008040 5/11 Cross Hyb Matching Probes None
GENEFINDER00000007905 3/11 Cross Hyb Matching Probes None
GENEFINDER00000043457 8/11 Cross Hyb Matching Probes None
GENEFINDER00000044480 7/11 Cross Hyb Matching Probes None
T02H6.3 2/11 Cross Hyb Matching Probes A 
Y116A8C.41 2/11 Cross Hyb Matching Probes A 
Y54B9A.1 6/11 Cross Hyb Matching Probes A 
B0310.4 3/11 Cross Hyb Matching Probes None
GENEFINDER00000011916 11/11 Negative Strand Matching Probes None
GENEFINDER00000030894 10/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title S. muris microneme antigen
Ensembl C53C11.4
Entrez Gene 183756 Entrez gene
SwissProt P91183 EMBL-EBI
WormBase CE04267 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42309 Hypothetical protein C53C11.4 [Caenorhabditis elegans] ref|NP_510809.1| C53C11.4 [Caenorhabditis elegans] 2.0E-18
blast AAK68515 Hypothetical protein Y54B9A.1 [Caenorhabditis elegans] ref|NP_505440.1| Y54B9A.1 [Caenorhabditis elegans] 8.0E-12
blast AAB42309 Hypothetical protein C53C11.4 [Caenorhabditis elegans] ref|NP_510809.1| C53C11.4 [Caenorhabditis elegans] 1.0E-11
blast AAA81461 Hypothetical protein C24A3.1 [Caenorhabditis elegans] ref|NP_509521.1| C24A3.1 [Caenorhabditis elegans] 2.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 2.5E-8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 6.2E-8
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.6E-7
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 8.8E-9
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 0.0022
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 1.6E-7
Pfam IPR008627 EMBL-EBI GETHR pentapeptide 2.4E-7
Sequence
Target Sequence 
>C. ELEGANS:172858_X_AT
aattctggattgttctagaaccttctggaaaatttttaaaaatgttgctgcgagatcttc
gtggcgagacccatcgtggcgagacccatcatggcgagacccatcgtggcgaggcccatc
gtggtgagacccatcgtggcgagacccaccgtggtgagacccgtcgtggtgagacccatc
gtggtgagacccgtcgtggtgagacccaaaattttggcgggaaatttaaattttctgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTGGATTGTTCTAGAACCTTC 600 175 44 Antisense
GGATTGTTCTAGAACCTTCTGGAAA 179 505 50 Antisense
AAAAATGTTGCTGCGAGATCTTCGT 605 129 81 Antisense
TGTTGCTGCGAGATCTTCGTGGCGA 290 561 86 Antisense
CTGCGAGATCTTCGTGGCGAGACCC 433 237 91 Antisense
CCATCATGGCGAGACCCATCGTGGC 160 249 129 Antisense
CCATCGTGGTGAGACCCATCGTGGC 119 271 159 Antisense
TCGTGGTGAGACCCATCGTGGTGAG 167 583 207 Antisense
TGGTGAGACCCATCGTGGTGAGACC 543 551 210 Antisense
CGTCGTGGTGAGACCCAAAATTTTG 295 245 235 Antisense
TGGCGGGAAATTTAAATTTTCTGTG 215 541 258 Antisense
Sequence Source Affymetrix Proprietary Database