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[172857_x_at] major sperm protein MSP-19

Description F36H12.7 /REP_DB=WormBase Gene ID /WP=CE02806 /GEN=msp-19 /GB=AAC26926.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=major sperm protein MSP-19
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_high_8_8 > 06      6grp_highest_nonorm > 49      6grp_total > 99      4grp_total > 02      6grp_highest_sub > In      6grp_cgc > 79      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 532
1 2 3 4 range
A 165.4
(-2.6)
P 		160.2
(-2.6)
A 		127.7
(-3)
P 		659.4
(3)
P 		532
B 172.1
(-2.4)
P 		155.9
(-3)
P 		190.2
(-1.7)
P 		317.7
(3)
P 		162
C 186
(-2.7)
P 		165.5
(-3)
P 		165.3
(-3)
P 		585.5
(3)
P 		420
avr 174.5
(-2.8) 		160.5
(-3) 		161.1
(-3) 		520.9
(3) 		360

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13603
1 2 3 4 5 6 range
A 136.6
(-3)
P 		95.2
(-3)
P 		280.3
(-2.9)
P 		1258.2
(-2.5)
P 		8783.5
(0.8)
P 		13698.4
(3)
P 		13603
B 143.6
(-3)
P 		196.9
(-3)
P 		217.8
(-3)
P 		952.9
(-2.5)
P 		8796.4
(2.4)
P 		9820.5
(3)
P 		9677
C 109.3
(-3)
P 		304.1
(-2.9)
P 		128.7
(-3)
P 		992.7
(-2.6)
P 		11910.8
(3)
P 		8368
(1.2)
P 		11802
avr 129.8
(-3) 		198.7
(-3) 		208.9
(-3) 		1067.9
(-2.5) 		9830.2
(2.5) 		10629
(3) 		10499
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 60.2
(-0.5)
P 		34.8
(-2.9)
A 		33.4
(-3)
P 		96.5
(3)
P 		63
B 54.9
(0.4)
P 		38.5
(-3)
P 		44.1
(-1.8)
P 		67.7
(3)
P 		29
C 61.6
(-1.4)
P 		47.6
(-3)
P 		57.6
(-1.8)
P 		98.7
(3)
P 		51
avr 58.9
(-0.6) 		40.3
(-3) 		45
(-2.4) 		87.6
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3829
1 2 3 4 5 6 range
A 25.2
(-3)
P 		33.9
(-3)
P 		61.1
(-2.9)
P 		319.1
(-2.5)
P 		2650.5
(1.8)
P 		3335.1
(3)
P 		3310
B 50
(-3)
P 		65.5
(-3)
P 		52.9
(-3)
P 		252.4
(-2.7)
P 		3573.9
(2.9)
P 		3662
(3)
P 		3612
C 40.5
(-3)
P 		92.8
(-2.9)
P 		32.7
(-3)
P 		199.6
(-2.7)
P 		3854.2
(3)
P 		2801.3
(1.3)
P 		3822
avr 38.6
(-3) 		64.1
(-3) 		48.9
(-3) 		257
(-2.6) 		3359.5
(3) 		3266.1
(2.8) 		3321
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172857_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11115
Sequence Type Exemplar sequence
Representative Public ID F36H12.7 NCBI
Target Description F36H12.7 /REP_DB=WormBase Gene ID /WP=CE02806 /GEN=msp-19 /GB=AAC26926.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=major sperm protein MSP-19
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068359(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068359 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-19) (msp-19) mRNA, complete cds. 11/11 None
SNAP00000002639 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5260578:5260961:1 11/11 None
GENEFINDER00000002661 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5260578:5261280:1 11/11 None
F36H12.7 ENSEMBL cdna:known chromosome:CEL140:IV:5260578:5260961:1 gene:F36H12.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062487 2/11 Cross Hyb Matching Probes A 
NM_062497 4/11 Cross Hyb Matching Probes A 
NM_068370 6/11 Cross Hyb Matching Probes A 
NM_068310 6/11 Cross Hyb Matching Probes A 
NM_068312 5/11 Cross Hyb Matching Probes A 
NM_068313 7/11 Cross Hyb Matching Probes A 
NM_069063 2/11 Cross Hyb Matching Probes A 
NM_062558 2/11 Cross Hyb Matching Probes A 
NM_062571 1/11 Cross Hyb Matching Probes A 
NM_068351 7/11 Cross Hyb Matching Probes A 
NM_068354 7/11 Cross Hyb Matching Probes A 
NM_068377 7/11 Cross Hyb Matching Probes A 
NM_068379 4/11 Cross Hyb Matching Probes A 
NM_062500 2/11 Cross Hyb Matching Probes A 
NM_062743 1/11 Cross Hyb Matching Probes A 
NM_062748 1/11 Cross Hyb Matching Probes A 
NM_062753 1/11 Cross Hyb Matching Probes A 
NM_069321 1/11 Cross Hyb Matching Probes A 
NM_069339 1/11 Cross Hyb Matching Probes A 
NM_069341 1/11 Cross Hyb Matching Probes A 
NM_069358 1/11 Cross Hyb Matching Probes A 
NM_069359 1/11 Cross Hyb Matching Probes A 
NM_069361 1/11 Cross Hyb Matching Probes A 
NM_069380 1/11 Cross Hyb Matching Probes A 
NM_068372 4/11 Cross Hyb Matching Probes A 
SNAP00000024816 1/11 Cross Hyb Matching Probes None
GENEFINDER00000024829 1/11 Cross Hyb Matching Probes None
SNAP00000019951 2/11 Cross Hyb Matching Probes None
GENEFINDER00000019958 2/11 Cross Hyb Matching Probes None
SNAP00000021329 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021346 1/11 Cross Hyb Matching Probes None
SNAP00000031245 1/11 Cross Hyb Matching Probes None
GENEFINDER00000031258 1/11 Cross Hyb Matching Probes None
SNAP00000034943 2/11 Cross Hyb Matching Probes None
GENEFINDER00000034961 2/11 Cross Hyb Matching Probes None
SNAP00000041369 1/11 Cross Hyb Matching Probes None
SNAP00000041374 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041386 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041398 1/11 Cross Hyb Matching Probes None
SNAP00000043868 2/11 Cross Hyb Matching Probes None
SNAP00000043876 4/11 Cross Hyb Matching Probes None
GENEFINDER00000043888 2/11 Cross Hyb Matching Probes None
SNAP00000002641 6/11 Cross Hyb Matching Probes None
GENEFINDER00000002656 4/11 Cross Hyb Matching Probes None
SNAP00000004243 1/11 Cross Hyb Matching Probes None
SNAP00000004244 1/11 Cross Hyb Matching Probes None
SNAP00000004246 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004263 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004265 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004273 1/11 Cross Hyb Matching Probes None
SNAP00000006004 6/11 Cross Hyb Matching Probes None
SNAP00000006006 4/11 Cross Hyb Matching Probes None
SNAP00000006011 3/11 Cross Hyb Matching Probes None
SNAP00000006013 7/11 Cross Hyb Matching Probes None
SNAP00000006015 4/11 Cross Hyb Matching Probes None
GENEFINDER00000006018 3/11 Cross Hyb Matching Probes None
GENEFINDER00000006020 6/11 Cross Hyb Matching Probes None
GENEFINDER00000006021 7/11 Cross Hyb Matching Probes None
GENEFINDER00000006023 4/11 Cross Hyb Matching Probes None
GENEFINDER00000006024 4/11 Cross Hyb Matching Probes None
SNAP00000007231 6/11 Cross Hyb Matching Probes None
GENEFINDER00000007236 6/11 Cross Hyb Matching Probes None
SNAP00000023386 1/11 Cross Hyb Matching Probes None
GENEFINDER00000023395 1/11 Cross Hyb Matching Probes None
SNAP00000029404 5/11 Cross Hyb Matching Probes None
SNAP00000029405 7/11 Cross Hyb Matching Probes None
GENEFINDER00000029413 5/11 Cross Hyb Matching Probes None
GENEFINDER00000029416 7/11 Cross Hyb Matching Probes None
SNAP00000029847 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029849 2/11 Cross Hyb Matching Probes None
SNAP00000034129 7/11 Cross Hyb Matching Probes None
SNAP00000034134 7/11 Cross Hyb Matching Probes None
GENEFINDER00000034137 7/11 Cross Hyb Matching Probes None
GENEFINDER00000034140 7/11 Cross Hyb Matching Probes None
SNAP00000041533 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041543 1/11 Cross Hyb Matching Probes None
SNAP00000043472 1/11 Cross Hyb Matching Probes None
SNAP00000043475 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043484 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043489 1/11 Cross Hyb Matching Probes None
SNAP00000043994 3/11 Cross Hyb Matching Probes None
GENEFINDER00000044007 3/11 Cross Hyb Matching Probes None
R05F9.8 2/11 Cross Hyb Matching Probes A 
R05F9.13 4/11 Cross Hyb Matching Probes A 
ZK546.6 2/11 Cross Hyb Matching Probes A 
F59A6.8 1/11 Cross Hyb Matching Probes None
F58A6.8 2/11 Cross Hyb Matching Probes A 
C34F11.4 1/11 Cross Hyb Matching Probes A 
K05F1.2 1/11 Cross Hyb Matching Probes A 
ZK1248.6 1/11 Cross Hyb Matching Probes A 
ZK1248.4 1/11 Cross Hyb Matching Probes A 
C09B9.6 6/11 Cross Hyb Matching Probes A 
R13H9.2 5/11 Cross Hyb Matching Probes A 
R13H9.4 7/11 Cross Hyb Matching Probes A 
Y59E9AR.7 7/11 Cross Hyb Matching Probes A 
Y59E9AR.1 7/11 Cross Hyb Matching Probes A 
F36H12.6 4/11 Cross Hyb Matching Probes None
ZK354.5 6/11 Cross Hyb Matching Probes A 
ZK354.4 4/11 Cross Hyb Matching Probes A 
ZK354.10 3/11 Cross Hyb Matching Probes None
ZK354.11 7/11 Cross Hyb Matching Probes A 
ZK354.1 4/11 Cross Hyb Matching Probes A 
Y59H11AM.1 2/11 Cross Hyb Matching Probes A 
ZK1251.6 1/11 Cross Hyb Matching Probes A 
T13F2.10 1/11 Cross Hyb Matching Probes A 
T13F2.11 1/11 Cross Hyb Matching Probes A 
K07F5.1 1/11 Cross Hyb Matching Probes A 
K07F5.2 1/11 Cross Hyb Matching Probes A 
K07F5.3 1/11 Cross Hyb Matching Probes A 
F32B6.6 1/11 Cross Hyb Matching Probes A 
C04G2.3 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4933009-4933393(+) 93.23 93.23
chrIV:5260583-5260967(+) 100.0 100.0
chrIV:5249434-5249815(+) 98.18 98.18
chrIV:5062573-5062957(+) 97.66 97.66
chrIV:5297956-5298340(+) 96.35 96.35
chrIV:5316517-5316901(+) 95.83 95.83
chrIV:8571425-8571809(+) 94.79 94.79
chrIV:9894608-9894992(+) 93.23 93.23
chrIV:9770025-9770409(+) 92.97 92.97
chrII:4892294-4892678(-) 94.27 94.27
chrII:4916162-4916546(-) 94.27 94.27
chrII:5012855-5013236(-) 92.45 92.45
chrIV:5064673-5065057(-) 98.96 98.96
chrIV:5241396-5241777(-) 98.18 98.18
chrIV:5294951-5295335(-) 98.18 98.18
chrIV:5312722-5313106(-) 98.18 98.18
chrIV:5055626-5056010(-) 97.92 97.92
chrIV:9766750-9767134(-) 93.49 93.49
chrIV:9836013-9836397(-) 93.23 93.23
chrIV:10143333-10143717(-) 92.97 92.97
Public Domain and Genome References
Gene Title major sperm protein MSP-19
Gene Symbol msp-19
Ensembl F36H12.7
Entrez Gene 177305 Entrez gene
SwissProt P53017 EMBL-EBI
WormBase CE02806 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA85761 Major sperm protein protein 50 [Caenorhabditis elegans] emb|CAA94282.1| Hypothetical protein K07F5.1 [Caenorhabditis elegans] gb|AAK85493.1| Major sperm protein protein 53 [Caenorhabditis elegans] gb|AAB42254.1| Major sperm protein protein 51 [Caenorhabditis elegans] gb|AAB42255.1| Major sperm protein protein 113 [Caenorhabditis elegans] gb|AAB42253.1| Major sperm protein protein 59 [Caenorhabditis elegans] gb|AAB42256.1| Major sperm protein protein 65 [Caenorhabditis elegans] gb|AAC71087.1| Major sperm protein protein 64 [Caenorhabditis elegans] gb|AAA68711.1| Major sperm protein protein 142 [Caenorhabditis elegans] gb|AAA96204.1| Major sperm protein protein 45 [Caenorhabditis elegans] gb|AAC26926.1| Major sperm protein protein 19 [Caenorhabditis elegans] ref|NP_500773.1| Major Sperm Protein family member (msp-113) [Caenorhabditis elegans] ref|NP_500771.1| Major Sperm Protein family member (msp-51) [Caenorhabditis elegans] ref|NP_501759.1| Major Sperm Protein family member (msp-81) [Caenorhabditis elegans] ref|NP_500780.1| Major Sperm Protein family member (msp-65) [Caenorhabditis elegans] ref|NP_500778.1| Major Sperm Protein family member (msp-59) [Caenorhabditis elegans] ref|NP_500760.1| Major Sperm Protein family member (msp-19) [Caenorhabditis elegans] ref|NP_500714.1| Major Sperm Protein family member (msp-53) [Caenorhabditis elegans] ref|NP_495149.1| Major Sperm Protein family member (msp-64) [Caenorhabditis elegans] ref|NP_495144.1| Major Sperm Protein family member (msp-142) [Caenorhabditis elegans] ref|NP_494972.1| Major Sperm Protein family member (msp-50) [Caenorhabditis elegans] ref|NP_494959.1| Major Sperm Protein family member (msp-45) [Caenorhabditis elegans] ref|NP_494898.1| Major Sperm Protein family member (msp-31) [Caenorhabditis elegans] ref|NP_494865.1| Major Sperm Protein family member (msp-40) [Caenorhabditis elegans] gb|AAK31477.1| Major sperm protein protein 40 [Caenorhabditis elegans] gb|AAA83175.1| Major sperm protein protein 31 [Caenorhabditis elegans] sp|P53017|MSP19_CAEEL Major sperm protein 19/31/40/45/50/51/53/59/61/65/81/113/142 (MSP) 1.0E-71
blast CAB03362 Hypothetical protein T13F2.11 [Caenorhabditis elegans] ref|NP_501742.1| Major Sperm Protein family member (msp-78) [Caenorhabditis elegans] sp|Q94053|MSP78_CAEEL Major sperm protein 78 (MSP) 2.0E-71
blast AAK68539 Hypothetical protein Y59H11AM.1 [Caenorhabditis elegans] ref|NP_501464.1| Y59H11AM.1 [Caenorhabditis elegans] 3.0E-71
blast AAA85761 Major sperm protein protein 50 [Caenorhabditis elegans] emb|CAA94282.1| Hypothetical protein K07F5.1 [Caenorhabditis elegans] gb|AAK85493.1| Major sperm protein protein 53 [Caenorhabditis elegans] gb|AAB42254.1| Major sperm protein protein 51 [Caenorhabditis elegans] gb|AAB42255.1| Major sperm protein protein 113 [Caenorhabditis elegans] gb|AAB42253.1| Major sperm protein protein 59 [Caenorhabditis elegans] gb|AAB42256.1| Major sperm protein protein 65 [Caenorhabditis elegans] gb|AAC71087.1| Major sperm protein protein 64 [Caenorhabditis elegans] gb|AAA68711.1| Major sperm protein protein 142 [Caenorhabditis elegans] gb|AAA96204.1| Major sperm protein protein 45 [Caenorhabditis elegans] gb|AAC26926.1| Major sperm protein protein 19 [Caenorhabditis elegans] ref|NP_500773.1| Major Sperm Protein family member (msp-113) [Caenorhabditis elegans] ref|NP_500771.1| Major Sperm Protein family member (msp-51) [Caenorhabditis elegans] ref|NP_501759.1| Major Sperm Protein family member (msp-81) [Caenorhabditis elegans] ref|NP_500780.1| Major Sperm Protein family member (msp-65) [Caenorhabditis elegans] ref|NP_500778.1| Major Sperm Protein family member (msp-59) [Caenorhabditis elegans] ref|NP_500760.1| Major Sperm Protein family member (msp-19) [Caenorhabditis elegans] ref|NP_500714.1| Major Sperm Protein family member (msp-53) [Caenorhabditis elegans] ref|NP_495149.1| Major Sperm Protein family member (msp-64) [Caenorhabditis elegans] ref|NP_495144.1| Major Sperm Protein family member (msp-142) [Caenorhabditis elegans] ref|NP_494972.1| Major Sperm Protein family member (msp-50) [Caenorhabditis elegans] ref|NP_494959.1| Major Sperm Protein family member (msp-45) [Caenorhabditis elegans] ref|NP_494898.1| Major Sperm Protein family member (msp-31) [Caenorhabditis elegans] ref|NP_494865.1| Major Sperm Protein family member (msp-40) [Caenorhabditis elegans] gb|AAK31477.1| Major sperm protein protein 40 [Caenorhabditis elegans] gb|AAA83175.1| Major sperm protein protein 31 [Caenorhabditis elegans] sp|P53017|MSP19_CAEEL Major sperm protein 19/31/40/45/50/51/53/59/61/65/81/113/142 (MSP) 5.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 4.7E-35
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 5.5E-35
Sequence
Target Sequence 
>C. ELEGANS:172857_X_AT
tctgtcccaccaggagacatccaaacccagccgggtactaagattgtgttcaatgcccca
tacgacgacaaacacacctaccacatcaaggtgatcaactcatctgctcgccgtattgga
tacggtatcaagaccaccaatatgaagagacttggagttgatccaccatgtggagttctc
gacccaaaggaagcagttcttcttgccgtttcctgtgatgctttcgcctttggacaagaa
gacaccaacaacgatcgtatcactgttgagtggaccaacaccccggatggagctgccaag
caattccgccgtgaatggttccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGTCCCACCAGGAGACATCCAAA 20 609 22 Antisense
ACCCAGCCGGGTACTAAGATTGTGT 619 89 46 Antisense
TCAATGCCCCATACGACGACAAACA 378 633 71 Antisense
CAAGGTGATCAACTCATCTGCTCGC 511 183 108 Antisense
TCATCTGCTCGCCGTATTGGATACG 185 621 121 Antisense
ACCATGTGGAGTTCTCGACCCAAAG 502 83 186 Antisense
AAGGAAGCAGTTCTTCTTGCCGTTT 539 159 208 Antisense
TGATGCTTTCGCCTTTGGACAAGAA 95 565 237 Antisense
GAAGACACCAACAACGATCGTATCA 697 339 259 Antisense
GGATGGAGCTGCCAAGCAATTCCGC 399 515 306 Antisense
GCAATTCCGCCGTGAATGGTTCCAA 200 317 321 Antisense
Sequence Source Affymetrix Proprietary Database