[Home] | [Total List]

[172856_x_at] protein-tyrosine phosphatase /// ---

Description R12E2.10 /REP_DB=WormBase Gene ID /WP=CE18142 /TR=O61789 /GB=AAC17031.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 97      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 114.7
(-3)
P 		120.8
(-2.5)
A 		182.8
(2.5)
A 		189.6
(3)
P 		75
B 125.2
(-3)
P 		138.2
(-1.8)
A 		135.6
(-2.1)
A 		191.6
(3)
P 		66
C 119.8
(-2.7)
P 		113.1
(-3)
A 		161.7
(-1.2)
A 		272.6
(3)
P 		160
avr 119.9
(-3) 		124
(-2.7) 		160
(-0.5) 		217.9
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1576
1 2 3 4 5 6 range
A 137.2
(-3)
M 		143.1
(-3)
A 		172.4
(-2.9)
P 		237.4
(-2.6)
P 		1064.2
(0.6)
P 		1692.4
(3)
P 		1555
B 116.7
(-3)
M 		151.4
(-2.9)
M 		245.3
(-2.5)
P 		322.1
(-2.1)
P 		950.7
(0.5)
P 		1558.4
(3)
P 		1442
C 127.4
(-3)
P 		135.4
(-3)
M 		267.3
(-2.4)
P 		469.4
(-1.6)
P 		1103.8
(0.9)
P 		1626.3
(3)
P 		1499
avr 127.1
(-3) 		143.3
(-2.9) 		228.3
(-2.6) 		343
(-2.1) 		1039.6
(0.7) 		1625.7
(3) 		1499
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 41.8
(1.3)
P 		26.2
(-3)
A 		47.8
(3)
A 		27.8
(-2.6)
P 		22
B 39.9
(2.4)
P 		34.1
(-1.3)
A 		31.4
(-3)
A 		40.8
(3)
P 		9
C 39.7
(-1.2)
P 		32.5
(-3)
A 		56.4
(3)
A 		46
(0.4)
P 		24
avr 40.5
(1) 		30.9
(-3) 		45.2
(3) 		38.2
(0.1) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 556
1 2 3 4 5 6 range
A 25.3
(-3)
M 		50.9
(-2.6)
A 		37.6
(-2.8)
P 		60.2
(-2.5)
P 		321.1
(1.6)
P 		412.1
(3)
P 		387
B 40.6
(-3)
M 		50.4
(-2.9)
M 		59.6
(-2.8)
P 		85.3
(-2.5)
P 		386.3
(0.8)
P 		581.1
(3)
P 		541
C 47.2
(-2.9)
P 		41.3
(-3)
M 		68
(-2.7)
P 		94.4
(-2.4)
P 		357.2
(0.8)
P 		544.4
(3)
P 		503
avr 37.7
(-3) 		47.5
(-2.9) 		55.1
(-2.8) 		80
(-2.5) 		354.9
(1) 		512.5
(3) 		475
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172856_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1983
Sequence Type Exemplar sequence
Representative Public ID R12E2.10 NCBI
Target Description R12E2.10 /REP_DB=WormBase Gene ID /WP=CE18142 /TR=O61789 /GB=AAC17031.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058868(11), NM_058915(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058868 NCBI Caenorhabditis elegans T21E3.1 (T21E3.1) mRNA, complete cds. 11/11 A 
NM_058915 NCBI Caenorhabditis elegans R12E2.10 (R12E2.10) mRNA, complete cds. 11/11 A 
SNAP00000012681 ENSEMBL cdna:SNAP chromosome:CEL140:I:4169085:4171588:-1 11/11 None
GENEFINDER00000012691 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4169085:4171588:-1 11/11 None
SNAP00000021727 ENSEMBL cdna:SNAP chromosome:CEL140:I:3932214:3934717:1 11/11 None
GENEFINDER00000021731 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3932214:3934717:1 11/11 None
T21E3.1 ENSEMBL cdna:known chromosome:CEL140:I:3932212:3934792:1 gene:T21E3.1 11/11 A 
R12E2.10 ENSEMBL cdna:known chromosome:CEL140:I:4169010:4171590:-1 gene:R12E2.10 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3932213-3934717(+) 99.12 99.12
chrI:4169084-4171588(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase

Ensembl T21E3.1
R12E2.10
Entrez Gene 171980 Entrez gene
172007 Entrez gene
SwissProt O61789 EMBL-EBI
O01767 EMBL-EBI
WormBase CE18142 Wormbase
CE13874 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54136 Hypothetical protein T21E3.1 [Caenorhabditis elegans] ref|NP_491269.1| T21E3.1 [Caenorhabditis elegans] 0.0
blast NP_491316 R12E2.10 [Caenorhabditis elegans] gb|AAC17031.1| Hypothetical protein R12E2.10 [Caenorhabditis elegans] 0.0
blast CAE66704 Hypothetical protein CBG12049 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 6.4E-71
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.8E-71
Sequence
Target Sequence 
>C. ELEGANS:172856_X_AT
tcttcgtctcattggaccggatcgcgaggaacgtcacgtggaacattggcaaggagacgt
gaacaattcatcgaatatgtactctccattaaatattcttcgtttacttcgcaacgcgtc
gaagccagtcgttatccatgatcatttgggagtttctagagcggcttgtcttgttgctgc
cgagattgccatttgcagtttgctccgagggccaacttacaagtacccagtacaacgagc
tgtccaatttcttcgtcagcgccgtccattcagcatcgagactcccatgcagtacatctt
tgtgcatcgtcttgttgcattcttcttccgtgacgtcattggaagtgcaaaggagttgga
tgtcgattatgaaagatggctccaagaacgatccgaacgcatgttccttgatgatcttgc
tgctccaattcctggctatcgtttgctgtctccaagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCGTCTCATTGGACCGGATCGC 424 617 1671 Antisense
GAAGCCAGTCGTTATCCATGATCAT 404 345 1791 Antisense
CTAGAGCGGCTTGTCTTGTTGCTGC 394 225 1826 Antisense
TTGTTGCTGCCGAGATTGCCATTTG 619 699 1841 Antisense
GCCATTTGCAGTTTGCTCCGAGGGC 480 281 1858 Antisense
AGCTGTCCAATTTCTTCGTCAGCGC 135 81 1908 Antisense
TCAGCATCGAGACTCCCATGCAGTA 366 623 1940 Antisense
GTACATCTTTGTGCATCGTCTTGTT 258 461 1962 Antisense
ATTCTTCTTCCGTGACGTCATTGGA 557 11 1989 Antisense
ATGTTCCTTGATGATCTTGCTGCTC 529 47 2071 Antisense
GCTATCGTTTGCTGTCTCCAAGAGC 685 301 2105 Antisense
Sequence Source Affymetrix Proprietary Database