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[172852_x_at] major sperm protein /// major sperm protein

Description K07F5.2 /REP_DB=WormBase Gene ID /WP=CE03853 /GEN=msp-10 /TR=Q27280 /GB=CAA94283.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=major sperm protein
Cluster 6grp_high1_10_10 > 99      4grp_high_8_8 > 06      6grp_total > 99      4grp_total > 02      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 965
1 2 3 4 range
A 68.7
(-2.9)
A 		80.7
(-2.8)
A 		56.8
(-3)
A 		832.1
(3)
P 		775
B 100.1
(-2.6)
P 		58
(-3)
P 		119.8
(-2.4)
P 		714.1
(3)
P 		656
C 91.9
(-2.8)
P 		67
(-3)
P 		73
(-3)
A 		1021.4
(3)
P 		954
avr 86.9
(-2.9) 		68.6
(-3) 		83.2
(-2.9) 		855.9
(3) 		787

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14372
1 2 3 4 5 6 range
A 97
(-3)
P 		49
(-3)
A 		272.4
(-2.9)
P 		1688.6
(-2.3)
P 		9795.5
(1.1)
P 		14421.4
(3)
P 		14372
B 64.7
(-3)
M 		144.9
(-3)
P 		101.1
(-3)
P 		1354.9
(-2.3)
P 		10299.6
(2.9)
P 		10457
(3)
P 		10392
C 60
(-3)
A 		289.1
(-2.9)
P 		90.8
(-3)
A 		1181.2
(-2.5)
P 		14105.9
(3)
P 		10599.8
(1.5)
P 		14046
avr 73.9
(-3) 		161
(-3) 		154.8
(-3) 		1408.2
(-2.3) 		11400.3
(2.8) 		11826.1
(3) 		11752
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 25
(-2.4)
A 		17.5
(-2.8)
A 		14.8
(-3)
A 		121.8
(3)
P 		107
B 31.9
(-2.2)
P 		14.3
(-3)
P 		27.8
(-2.4)
P 		152.2
(3)
P 		138
C 30.4
(-2.6)
P 		19.3
(-3)
P 		25.5
(-2.8)
A 		172.2
(3)
P 		153
avr 29.1
(-2.4) 		17
(-3) 		22.7
(-2.7) 		148.7
(3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4547
1 2 3 4 5 6 range
A 17.9
(-3)
P 		17.4
(-3)
A 		59.3
(-2.9)
P 		428.3
(-2.3)
P 		2955.9
(2)
P 		3511.2
(3)
P 		3494
B 22.5
(-3)
M 		48.2
(-3)
P 		24.6
(-3)
P 		358.9
(-2.5)
P 		4184.6
(3)
P 		3899.4
(2.6)
P 		4162
C 22.3
(-3)
A 		88.2
(-2.9)
P 		23.1
(-3)
A 		237.5
(-2.7)
P 		4564.5
(3)
P 		3548.4
(1.7)
P 		4542
avr 20.9
(-3) 		51.3
(-3) 		35.7
(-3) 		341.6
(-2.5) 		3901.7
(3) 		3653
(2.6) 		3881
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172852_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10155
Sequence Type Exemplar sequence
Representative Public ID K07F5.2 NCBI
Target Description K07F5.2 /REP_DB=WormBase Gene ID /WP=CE03853 /GEN=msp-10 /TR=Q27280 /GB=CAA94283.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=major sperm protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069359(11), NM_069361(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069359 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-10) (msp-10) mRNA, complete cds. 11/11 A 
NM_069361 NCBI Caenorhabditis elegans Major Sperm Protein family member (msp-56) (msp-56) mRNA, complete cds. 9/11 A 
SNAP00000004244 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9837623:9838006:1 11/11 None
SNAP00000004246 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9841513:9841896:1 9/11 None
GENEFINDER00000004265 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9837623:9838006:1 11/11 None
GENEFINDER00000004273 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9841513:9841896:1 9/11 None
K07F5.2 ENSEMBL cdna:known chromosome:CEL140:IV:9837623:9838006:1 gene:K07F5.2 11/11 A 
K07F5.3 ENSEMBL cdna:known chromosome:CEL140:IV:9841513:9841896:1 gene:K07F5.3 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069433 5/11 Cross Hyb Matching Probes A 
NM_062497 3/11 Cross Hyb Matching Probes A 
NM_068370 3/11 Cross Hyb Matching Probes A 
NM_069448 7/11 Cross Hyb Matching Probes A 
NM_068310 3/11 Cross Hyb Matching Probes A 
NM_068312 3/11 Cross Hyb Matching Probes A 
NM_068313 2/11 Cross Hyb Matching Probes A 
NM_069063 2/11 Cross Hyb Matching Probes A 
NM_062558 1/11 Cross Hyb Matching Probes A 
NM_062569 1/11 Cross Hyb Matching Probes A 
NM_062571 1/11 Cross Hyb Matching Probes A 
NM_068351 2/11 Cross Hyb Matching Probes A 
NM_068354 2/11 Cross Hyb Matching Probes A 
NM_068359 2/11 Cross Hyb Matching Probes A 
NM_068377 4/11 Cross Hyb Matching Probes A 
NM_068379 3/11 Cross Hyb Matching Probes A 
NM_062490 2/11 Cross Hyb Matching Probes A 
NM_062500 2/11 Cross Hyb Matching Probes A 
NM_062743 1/11 Cross Hyb Matching Probes A 
NM_062748 1/11 Cross Hyb Matching Probes A 
NM_062753 1/11 Cross Hyb Matching Probes A 
NM_069321 8/11 Cross Hyb Matching Probes A 
NM_069339 6/11 Cross Hyb Matching Probes A 
NM_069341 6/11 Cross Hyb Matching Probes A 
NM_069358 7/11 Cross Hyb Matching Probes A 
NM_069380 5/11 Cross Hyb Matching Probes A 
NM_062457 2/11 Cross Hyb Matching Probes A 
NM_062464 2/11 Cross Hyb Matching Probes A 
NM_068372 3/11 Cross Hyb Matching Probes A 
SNAP00000024816 4/11 Cross Hyb Matching Probes None
GENEFINDER00000024829 4/11 Cross Hyb Matching Probes None
SNAP00000000807 2/11 Cross Hyb Matching Probes None
SNAP00000000808 1/11 Cross Hyb Matching Probes None
GENEFINDER00000000821 2/11 Cross Hyb Matching Probes None
SNAP00000007649 2/11 Cross Hyb Matching Probes None
GENEFINDER00000007652 2/11 Cross Hyb Matching Probes None
SNAP00000016470 2/11 Cross Hyb Matching Probes None
GENEFINDER00000016484 2/11 Cross Hyb Matching Probes None
SNAP00000019951 1/11 Cross Hyb Matching Probes None
GENEFINDER00000019958 1/11 Cross Hyb Matching Probes None
SNAP00000021327 1/11 Cross Hyb Matching Probes None
SNAP00000021329 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021346 1/11 Cross Hyb Matching Probes None
GENEFINDER00000021348 1/11 Cross Hyb Matching Probes None
SNAP00000031245 1/11 Cross Hyb Matching Probes None
GENEFINDER00000031258 1/11 Cross Hyb Matching Probes None
SNAP00000034943 2/11 Cross Hyb Matching Probes None
GENEFINDER00000034961 2/11 Cross Hyb Matching Probes None
SNAP00000041369 1/11 Cross Hyb Matching Probes None
SNAP00000041374 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041386 1/11 Cross Hyb Matching Probes None
GENEFINDER00000041398 1/11 Cross Hyb Matching Probes None
SNAP00000043869 2/11 Cross Hyb Matching Probes None
SNAP00000043876 3/11 Cross Hyb Matching Probes None
GENEFINDER00000043883 2/11 Cross Hyb Matching Probes None
SNAP00000002639 2/11 Cross Hyb Matching Probes None
SNAP00000002641 2/11 Cross Hyb Matching Probes None
GENEFINDER00000002656 2/11 Cross Hyb Matching Probes None
GENEFINDER00000002661 2/11 Cross Hyb Matching Probes None
SNAP00000004243 7/11 Cross Hyb Matching Probes None
GENEFINDER00000004263 7/11 Cross Hyb Matching Probes None
SNAP00000005864 6/11 Cross Hyb Matching Probes None
GENEFINDER00000005869 6/11 Cross Hyb Matching Probes None
SNAP00000006004 3/11 Cross Hyb Matching Probes None
SNAP00000006006 3/11 Cross Hyb Matching Probes None
SNAP00000006011 2/11 Cross Hyb Matching Probes None
SNAP00000006013 4/11 Cross Hyb Matching Probes None
SNAP00000006015 3/11 Cross Hyb Matching Probes None
GENEFINDER00000006018 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006020 3/11 Cross Hyb Matching Probes None
GENEFINDER00000006021 4/11 Cross Hyb Matching Probes None
GENEFINDER00000006023 3/11 Cross Hyb Matching Probes None
GENEFINDER00000006024 3/11 Cross Hyb Matching Probes None
SNAP00000007231 3/11 Cross Hyb Matching Probes None
GENEFINDER00000007236 3/11 Cross Hyb Matching Probes None
SNAP00000023386 8/11 Cross Hyb Matching Probes None
GENEFINDER00000023395 8/11 Cross Hyb Matching Probes None
SNAP00000029404 3/11 Cross Hyb Matching Probes None
SNAP00000029405 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029413 3/11 Cross Hyb Matching Probes None
GENEFINDER00000029416 2/11 Cross Hyb Matching Probes None
SNAP00000029847 2/11 Cross Hyb Matching Probes None
GENEFINDER00000029849 2/11 Cross Hyb Matching Probes None
SNAP00000034129 2/11 Cross Hyb Matching Probes None
SNAP00000034134 2/11 Cross Hyb Matching Probes None
GENEFINDER00000034137 2/11 Cross Hyb Matching Probes None
GENEFINDER00000034140 2/11 Cross Hyb Matching Probes None
SNAP00000040132 3/11 Cross Hyb Matching Probes None
SNAP00000040134 5/11 Cross Hyb Matching Probes None
GENEFINDER00000040145 5/11 Cross Hyb Matching Probes None
SNAP00000041533 5/11 Cross Hyb Matching Probes None
GENEFINDER00000041543 5/11 Cross Hyb Matching Probes None
SNAP00000043472 6/11 Cross Hyb Matching Probes None
SNAP00000043475 6/11 Cross Hyb Matching Probes None
GENEFINDER00000043484 6/11 Cross Hyb Matching Probes None
GENEFINDER00000043489 6/11 Cross Hyb Matching Probes None
SNAP00000043994 2/11 Cross Hyb Matching Probes None
GENEFINDER00000044007 1/11 Cross Hyb Matching Probes None
F26G1.7 2/11 Cross Hyb Matching Probes A 
F26G1.8 1/11 Cross Hyb Matching Probes None
C33F10.9 2/11 Cross Hyb Matching Probes A 
R05F9.3 2/11 Cross Hyb Matching Probes R A 
R05F9.13 3/11 Cross Hyb Matching Probes A 
ZK546.6 2/11 Cross Hyb Matching Probes A 
F59A6.8 3/11 Cross Hyb Matching Probes None
F58A6.8 1/11 Cross Hyb Matching Probes A 
C34F11.6 1/11 Cross Hyb Matching Probes A 
C34F11.4 1/11 Cross Hyb Matching Probes A 
K05F1.2 1/11 Cross Hyb Matching Probes A 
ZK1248.6 1/11 Cross Hyb Matching Probes A 
ZK1248.4 1/11 Cross Hyb Matching Probes A 
C09B9.6 3/11 Cross Hyb Matching Probes A 
R13H9.2 3/11 Cross Hyb Matching Probes A 
R13H9.4 2/11 Cross Hyb Matching Probes A 
Y59E9AR.7 2/11 Cross Hyb Matching Probes A 
Y59E9AR.1 2/11 Cross Hyb Matching Probes A 
F36H12.7 2/11 Cross Hyb Matching Probes A 
F36H12.6 1/11 Cross Hyb Matching Probes None
ZK354.5 3/11 Cross Hyb Matching Probes A 
ZK354.4 3/11 Cross Hyb Matching Probes A 
ZK354.10 3/11 Cross Hyb Matching Probes None
ZK354.11 4/11 Cross Hyb Matching Probes A 
ZK354.1 3/11 Cross Hyb Matching Probes A 
Y59H11AM.1 2/11 Cross Hyb Matching Probes A 
ZK1251.6 8/11 Cross Hyb Matching Probes A 
T13F2.10 6/11 Cross Hyb Matching Probes A 
T13F2.11 6/11 Cross Hyb Matching Probes A 
W08D2.9 2/11 Cross Hyb Matching Probes None
K07F5.1 7/11 Cross Hyb Matching Probes A 
F32B6.6 5/11 Cross Hyb Matching Probes A 
C04G2.3 5/11 Cross Hyb Matching Probes None
C04G2.4 5/11 Cross Hyb Matching Probes A 
K08F4.8 6/11 Cross Hyb Matching Probes A 
K08F4.10 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4933009-4933393(+) 91.93 91.93
chrIV:9837628-9838012(+) 100.0 100.0
chrIV:9841518-9841902(+) 99.22 99.22
chrIV:9688997-9689381(+) 97.66 97.66
chrIV:10095410-10095794(+) 97.4 97.4
chrIV:9770025-9770409(+) 96.88 96.88
chrIV:10093057-10093457(+) 96.09 96.09
chrIV:9894608-9894992(+) 95.57 95.57
chrIV:5297956-5298340(+) 93.23 93.23
chrIV:5316517-5316901(+) 93.23 93.23
chrIV:5062573-5062957(+) 92.71 92.71
chrIV:8571425-8571809(+) 91.93 91.93
chrII:4916162-4916546(-) 92.19 92.19
chrIV:9836013-9836397(-) 97.14 97.14
chrIV:10143333-10143717(-) 96.35 96.35
chrIV:9766750-9767134(-) 96.09 96.09
chrIV:5055626-5056010(-) 92.97 92.97
chrIV:5312722-5313106(-) 92.71 92.71
chrIV:5294951-5295335(-) 92.19 92.19
chrIV:5064673-5065057(-) 91.93 91.93
Public Domain and Genome References
Gene Title major sperm protein
major sperm protein
Gene Symbol msp-10
msp-56
Ensembl K07F5.2
K07F5.3
Entrez Gene 177828 Entrez gene
177830 Entrez gene
SwissProt P05634 EMBL-EBI
WormBase CE03853 Wormbase
CE03853 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94283 Hypothetical protein K07F5.3 [Caenorhabditis elegans] emb|CAA94278.1| Hypothetical protein K07F5.2 [Caenorhabditis elegans] emb|CAA92502.1| Hypothetical protein ZK1251.6 [Caenorhabditis elegans] emb|CAA94674.1| Hypothetical protein C04G2.4 [Caenorhabditis elegans] ref|NP_501834.1| Major Sperm Protein family member (msp-36) [Caenorhabditis elegans] ref|NP_501762.1| Major Sperm Protein family member (msp-56) [Caenorhabditis elegans] ref|NP_501760.1| Major Sperm Protein family member (msp-10) [Caenorhabditis elegans] ref|NP_501722.1| Major Sperm Protein family member (msp-76) [Caenorhabditis elegans] sp|P05634|MSP10_CAEEL Major sperm protein 10/36/56/76 (MSP) emb|CAE59492.1| Hypothetical protein CBG02877 [Caenorhabditis briggsae] emb|CAE59433.1| Hypothetical protein CBG02806 [Caenorhabditis briggsae] emb|CAE59411.1| Hypothetical protein CBG02775 [Caenorhabditis briggsae] 2.0E-71
blast CAE60837 Hypothetical protein CBG04546 [Caenorhabditis briggsae] 3.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 3.6E-35
Sequence
Target Sequence 
>C. ELEGANS:172852_X_AT
caatcagtcccaccaggagacatccaaacccaaccaaacgcgaagatcgtcttcaatgca
ccatacgatgacaagcacacctaccacatcaaggtgatcaactcatcggctcgtcgtatt
ggatatggtatcaagaccaccaatatgaagagacttggagttgatccaccatgtggagtt
ctcgacccaaaggaagctgtgcttcttgctgtttcctgcgatgcttttgccttcggacaa
gaggataccaacaacgaccgtatcactgttgagtggaccaacaccccggatggcgctgcc
aaacaattccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATCAGTCCCACCAGGAGACATCC 20 181 19 Antisense
CAAACCCAACCAAACGCGAAGATCG 577 169 43 Antisense
GAAGATCGTCTTCAATGCACCATAC 124 339 60 Antisense
CATACGATGACAAGCACACCTACCA 166 215 80 Antisense
TCAAGGTGATCAACTCATCGGCTCG 151 633 107 Antisense
ACTCATCGGCTCGTCGTATTGGATA 663 99 119 Antisense
ACCATGTGGAGTTCTCGACCCAAAG 504 83 186 Antisense
AGGAAGCTGTGCTTCTTGCTGTTTC 312 55 209 Antisense
GATGCTTTTGCCTTCGGACAAGAGG 54 413 238 Antisense
ACTGTTGAGTGGACCAACACCCCGG 479 97 283 Antisense
GGATGGCGCTGCCAAACAATTCCGT 391 515 306 Antisense
Sequence Source Affymetrix Proprietary Database