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[172849_x_at]

Description C39D10.4 /REP_DB=WormBase Gene ID /WP=CE04183 /TR=Q18523 /GB=AAK39207.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=ice nucleation protein
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 52      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 62      6grp_total > 52      4grp_total > 10      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 461
1 2 3 4 range
A 219
(-2.8)
P 		264.3
(-2)
P 		209.3
(-3)
P 		525.3
(3)
P 		316
B 221
(-3)
P 		285.2
(-2.1)
P 		274
(-2.3)
P 		669.8
(3)
P 		449
C 229.3
(-2.8)
P 		246.5
(-2.5)
P 		216.8
(-3)
P 		564.9
(3)
P 		348
avr 223.1
(-3) 		265.3
(-2.3) 		233.4
(-2.8) 		586.7
(3) 		364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1049
1 2 3 4 5 6 range
A 223.8
(-2.3)
P 		287.4
(-1.9)
P 		1001.5
(3)
P 		348.3
(-1.5)
P 		371
(-1.3)
P 		126.9
(-3)
P 		875
B 298.4
(-2.3)
P 		673.6
(-0)
P 		1176.1
(3)
P 		576.8
(-0.6)
P 		278.7
(-2.4)
P 		184
(-3)
P 		992
C 126.9
(-3)
P 		799.4
(3)
P 		410.4
(-0.5)
P 		517.9
(0.5)
P 		303
(-1.4)
P 		165.4
(-2.7)
P 		673
avr 216.4
(-2.5) 		586.8
(0.6) 		862.7
(3) 		481
(-0.3) 		317.6
(-1.6) 		158.8
(-3) 		704
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 79.7
(3)
P 		57.4
(-2.4)
P 		54.7
(-3)
P 		76.9
(2.3)
P 		25
B 70.5
(-2.5)
P 		70.4
(-2.5)
P 		63.5
(-3)
P 		142.7
(3)
P 		79
C 75.9
(-1.8)
P 		70.9
(-3)
P 		75.6
(-1.8)
P 		95.3
(3)
P 		24
avr 75.4
(-1.4) 		66.2
(-2.8) 		64.6
(-3) 		105
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 41.3
(-2.7)
P 		102.2
(-0.7)
P 		218.1
(3)
P 		88.3
(-1.2)
P 		112
(-0.4)
P 		30.9
(-3)
P 		187
B 103.8
(-2)
P 		224.2
(1.3)
P 		285.6
(3)
P 		152.8
(-0.7)
P 		113.2
(-1.8)
P 		68.6
(-3)
P 		217
C 47
(-3)
P 		243.9
(3)
P 		104.4
(-1.3)
P 		104.2
(-1.3)
P 		98
(-1.4)
P 		55.4
(-2.7)
P 		197
avr 64
(-2.5) 		190.1
(2.5) 		202.7
(3) 		115.1
(-0.5) 		107.7
(-0.8) 		51.6
(-3) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172849_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16747
Sequence Type Exemplar sequence
Representative Public ID C39D10.4 NCBI
Target Description C39D10.4 /REP_DB=WormBase Gene ID /WP=CE04183 /TR=Q18523 /GB=AAK39207.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=ice nucleation protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C39D10.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C39D10.4 C39D10.4 /REP_DB=WormBase Gene ID /WP=CE04183 /TR=Q18523 /GB=AAK39207.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=ice nucleation protein None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7879812-7880374(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:172849_X_AT
atgcgtgggtggctggtcacaaaagtaagttggtggctggtcacaaaagtaagttggtgg
ctggtcacaaaagtaagttggtggctggtcacaaaagtaagttggtggctggtcacaaaa
gtaagttggtggctggtcacaaaagtaagttggtggctggtcacaaaagtaagttggtgg
ctggtcacaaaattaactcacgcggtatttgcatcgaatcgtgatcacattgtcagtatg
ttcaactttgaattcggagttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGTGGGTGGCTGGTCACAAAAG 564 41 13 Antisense
AGTAAGTTGGTGGCTGGTCACAAAA 77 61 36 Antisense
AAGTAAGTTGGTGGCTGGTCACAAA 363 155 59 Antisense
AAAGTAAGTTGGTGGCTGGTCACAA 166 1 106 Antisense
GTAAGTTGGTGGCTGGTCACAAAAG 308 461 133 Antisense
GGCTGGTCACAAAATTAACTCACGC 337 541 191 Antisense
TAACTCACGCGGTATTTGCATCGAA 220 637 206 Antisense
GCGGTATTTGCATCGAATCGTGATC 315 293 214 Antisense
GAATCGTGATCACATTGTCAGTATG 384 329 228 Antisense
CATTGTCAGTATGTTCAACTTTGAA 345 213 240 Antisense
GTTCAACTTTGAATTCGGAGTTCTG 630 445 252 Antisense
Sequence Source Affymetrix Proprietary Database