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[172847_x_at]

Description M04C7.2 /REP_DB=WormBase Gene ID /WP=CE12396 /TR=P91908 /GB=CAB05571.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster 6grp_total > 21      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 43.7
(-1.3)
A 		36.5
(-1.7)
A 		15.3
(-3)
A 		112.7
(3)
A 		97
B 64.9
(1.6)
A 		16.2
(-3)
A 		17.5
(-2.9)
A 		80.1
(3)
A 		64
C 34.1
(-2.5)
A 		18.3
(-3)
A 		21.7
(-2.9)
A 		199.6
(3)
P 		181
avr 47.6
(-1.4) 		23.7
(-2.7) 		18.2
(-3) 		130.8
(3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 16.8
(-2.2)
A 		6.2
(-2.9)
A 		93.8
(3)
A 		10.1
(-2.7)
A 		64.4
(1)
A 		5.1
(-3)
A 		89
B 39.4
(1.7)
A 		44.6
(2.5)
A 		48.3
(3)
A 		5.8
(-3)
A 		45.4
(2.6)
A 		11.2
(-2.2)
A 		43
C 20.5
(-2)
A 		102.8
(3)
A 		23.9
(-1.8)
A 		35.1
(-1.1)
A 		48
(-0.3)
A 		3.9
(-3)
A 		99
avr 25.6
(-0.7) 		51.2
(2.5) 		55.3
(3) 		17
(-1.7) 		52.6
(2.7) 		6.7
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 15.9
(2.7)
A 		7.9
(-1.1)
A 		4
(-3)
A 		16.5
(3)
A 		13
B 20.7
(3)
A 		4
(-3)
A 		4.1
(-3)
A 		17.1
(1.7)
A 		17
C 11.3
(-1.7)
A 		5.2
(-3)
A 		7.6
(-2.5)
A 		33.7
(3)
P 		29
avr 16
(0.8) 		5.7
(-2.8) 		5.2
(-3) 		22.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 3.1
(-2.4)
A 		2.2
(-2.7)
A 		20.4
(3)
A 		2.6
(-2.6)
A 		19.4
(2.7)
A 		1.2
(-3)
A 		19
B 13.7
(1.3)
A 		14.8
(1.7)
A 		11.7
(0.6)
A 		1.5
(-3)
A 		18.4
(3)
A 		4.2
(-2)
A 		17
C 7.6
(-1.7)
A 		31.4
(3)
A 		6.1
(-2)
A 		7.1
(-1.8)
A 		15.5
(-0.2)
A 		1.3
(-3)
A 		30
avr 8.1
(-0.7) 		16.1
(2.3) 		12.7
(1) 		3.7
(-2.4) 		17.8
(3) 		2.2
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172847_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2270
Sequence Type Exemplar sequence
Representative Public ID M04C7.2 NCBI
Target Description M04C7.2 /REP_DB=WormBase Gene ID /WP=CE12396 /TR=P91908 /GB=CAB05571.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y45F3A.7 ENSEMBL cdna:pseudogene chromosome:CEL140:III:10587753:10588590:-1 gene:Y45F3A.7 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066037 4/11 Cross Hyb Matching Probes A 
NM_075845 7/11 Cross Hyb Matching Probes A 
K03F8.1 4/11 Cross Hyb Matching Probes A 
T02E9.4 7/11 Cross Hyb Matching Probes None
K08G2.4 1/11 Cross Hyb Matching Probes None
F21E9.1 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl Y45F3A.7
Sequence
Target Sequence 
>C. ELEGANS:172847_X_AT
ttctgttgatggtgtccccattaccccatcctctactgttcgagacttaggtctaattac
tgattgcaagctaaagtttgaacaccacatagttaaagttagttgtctagccatgcttag
gtctaaacaaattctcaaagcattctcctccaattccccaaagttctacgcccaccttta
taaaacttatgttgctcccattatgaattattgctctgaagtctatgctccctactcaaa
ctcattgctttcagcaaaacttgaacaacctctaaggcactttaccaagcgcgttcttca
aagatgcaatacaaaattctcatcttatgaaaatcgactcagtataatggagctccactc
caccagacacaatagaattaaggctaaattgaaactactgtatagactgttaacaggtac
ctctcatttttctaaccttagacaatttgttactttctctagttctaataggcacccaat
gattttagttaggaaggacaaatgctccacacatttctttgctcttatcatcccagtctg
gaacaatttattcaaaaatgttacggtttttatgtccccatatcagttctgtgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGTTGATGGTGTCCCCATTACC 579 693 1476 Antisense
CCATCCTCTACTGTTCGAGACTTAG 642 271 1501 Antisense
GTTGTCTAGCCATGCTTAGGTCTAA 424 437 1577 Antisense
ACAAATTCTCAAAGCATTCTCCTCC 660 111 1602 Antisense
TTATTGCTCTGAAGTCTATGCTCCC 316 679 1683 Antisense
TCCCTACTCAAACTCATTGCTTTCA 90 599 1704 Antisense
TCTAAGGCACTTTACCAAGCGCGTT 462 603 1746 Antisense
GTATAATGGAGCTCCACTCCACCAG 684 453 1817 Antisense
TAACAGGTACCTCTCATTTTTCTAA 524 639 1886 Antisense
AAATGCTCCACACATTTCTTTGCTC 267 119 1975 Antisense
TATGTCCCCATATCAGTTCTGTGAA 484 655 2046 Antisense
Sequence Source Affymetrix Proprietary Database