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[172846_x_at] reverse transcriptase

Description F13E9.7 /REP_DB=WormBase Gene ID /WP=CE05609 /TR=Q19412 /GB=CAA93410.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster 6grp_total > 43      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 54.2
(-2.9)
A 		82.3
(-1.8)
A 		51.8
(-3)
A 		201
(3)
P 		149
B 73.9
(3)
A 		16.3
(-3)
A 		55.7
(1.1)
A 		52.9
(0.8)
A 		58
C 24.9
(-3)
A 		39.3
(-2.3)
A 		29.7
(-2.8)
A 		141
(3)
P 		116
avr 51
(-2.6) 		46
(-3) 		45.7
(-3) 		131.6
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 47.9
(0.7)
A 		4.8
(-3)
A 		74
(3)
P 		24.2
(-1.3)
A 		50.1
(0.9)
A 		20.8
(-1.6)
A 		69
B 68.2
(3)
M 		62.1
(1.8)
A 		52.7
(-0.1)
A 		58.1
(1)
A 		43.1
(-2)
A 		38.2
(-3)
A 		30
C 34.8
(-2.1)
A 		102.2
(3)
P 		59.5
(-0.2)
A 		50.4
(-0.9)
A 		23.2
(-3)
A 		61.3
(-0.1)
A 		79
avr 50.3
(-0) 		56.4
(1.5) 		62.1
(3) 		44.2
(-1.6) 		38.8
(-3) 		40.1
(-2.7) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 19.7
(-0.7)
A 		17.9
(-1.3)
A 		13.5
(-3)
A 		29.4
(3)
P 		16
B 23.6
(3)
A 		4
(-3)
A 		12.9
(-0.3)
A 		11.3
(-0.8)
A 		20
C 8.3
(-3)
A 		11.3
(-1.8)
A 		10.4
(-2.2)
A 		23.8
(3)
P 		16
avr 17.2
(0.5) 		11.1
(-3) 		12.3
(-2.3) 		21.5
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 8.8
(-0)
A 		1.7
(-3)
A 		16.1
(3)
P 		6.1
(-1.2)
A 		15.1
(2.6)
A 		5.1
(-1.6)
A 		14
B 23.7
(3)
M 		20.7
(1.3)
A 		12.8
(-3)
A 		15.4
(-1.6)
A 		17.5
(-0.4)
A 		14.2
(-2.2)
A 		11
C 12.9
(-1.6)
A 		31.2
(3)
P 		15.2
(-1.1)
A 		10.1
(-2.3)
A 		7.5
(-3)
A 		20.5
(0.3)
A 		24
avr 15.1
(0.7) 		17.9
(3) 		14.7
(0.4) 		10.5
(-3) 		13.4
(-0.6) 		13.3
(-0.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172846_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9389
Sequence Type Exemplar sequence
Representative Public ID F13E9.7 NCBI
Target Description F13E9.7 /REP_DB=WormBase Gene ID /WP=CE05609 /TR=Q19412 /GB=CAA93410.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069620(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069620 NCBI Caenorhabditis elegans F13E9.7 (F13E9.7) mRNA, complete cds. 11/11 None
F13E9.7 ENSEMBL cdna:known chromosome:CEL140:IV:10884633:10884905:1 gene:F13E9.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078385 7/11 Cross Hyb Matching Probes A 
SNAP00000043040 4/11 Cross Hyb Matching Probes None
GENEFINDER00000039340 6/11 Cross Hyb Matching Probes None
F29C4.3 7/11 Cross Hyb Matching Probes None
B0302.6 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14979715-14979988(+) 98.9 98.9
chrIV:10884638-10884911(+) 100.0 100.0
chrIV:118067-118340(+) 98.53 98.53
chrI:14011807-14012080(+) 99.63 99.63
chrIII:9682927-9683200(-) 99.27 99.27
chrV:223322-223595(-) 98.17 98.17
chrX:17195811-17196084(-) 98.17 98.17
chrI:13141044-13141308(-) 94.87 94.87
Public Domain and Genome References
Gene Title reverse transcriptase
Ensembl F13E9.7
Entrez Gene 184425 Entrez gene
SwissProt Q19412 EMBL-EBI
WormBase CE05609 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93410 Hypothetical protein F13E9.7 [Caenorhabditis elegans] ref|NP_502021.1| F13E9.7 [Caenorhabditis elegans] 5.0E-44
blast NP_510786 B0302.6 [Caenorhabditis elegans] 2.0E-43
blast T21231 hypothetical protein F22B3.3 - Caenorhabditis elegans 5.0E-24
Sequence
Target Sequence 
>C. ELEGANS:172846_X_AT
gcccgctcaacacgcttaaaatcacagcttattctcttgtataaaattataacaagcgct
gtacatttcccagatgcaaaaagattcattttgcatgtcagatctcaacgtcggccgatg
ctcctttctctagtcaatccaaagtccaaaggtttcttttctattgtcgttcccctttgg
aacagtatagttcacaatgtatcaacattcctttcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCGCTCAACACGCTTAAAATCAC 127 287 22 Antisense
AAATCACAGCTTATTCTCTTGTATA 444 117 40 Antisense
TATAACAAGCGCTGTACATTTCCCA 21 661 69 Antisense
GCGCTGTACATTTCCCAGATGCAAA 522 287 77 Antisense
GATTCATTTTGCATGTCAGATCTCA 140 431 104 Antisense
TTGCATGTCAGATCTCAACGTCGGC 47 695 112 Antisense
GCTCCTTTCTCTAGTCAATCCAAAG 556 297 141 Antisense
GTCAATCCAAAGTCCAAAGGTTTCT 580 461 154 Antisense
TCCAAAGGTTTCTTTTCTATTGTCG 113 589 166 Antisense
TCTATTGTCGTTCCCCTTTGGAACA 402 615 181 Antisense
ACAATGTATCAACATTCCTTTCCCC 145 115 215 Antisense
Sequence Source Affymetrix Proprietary Database