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[172842_x_at] acyl-carrier protein

Description Y56A3A.19 /REP_DB=WormBase Gene ID /WP=CE22587 /TR=Q9U241 /GB=CAB60498.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=acyl-carrier protein
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 34      6grp_total > 52      4grp_total > 58      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2524
1 2 3 4 range
A 1846.4
(0.3)
P 		2405.5
(2.5)
P 		2520.5
(3)
P 		1017.5
(-3)
P 		1503
B 1641.1
(-1)
P 		2858.7
(2.2)
P 		3158.9
(3)
P 		906.9
(-3)
P 		2252
C 2045.2
(-0.4)
P 		3430.9
(3)
P 		2804.3
(1.4)
P 		1019.3
(-3)
P 		2412
avr 1844.2
(-0.3) 		2898.4
(3) 		2827.9
(2.8) 		981.2
(-3) 		1917

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1578
1 2 3 4 5 6 range
A 2397.8
(-1)
P 		2425.1
(-0.8)
P 		3291.7
(3)
P 		2755.3
(0.6)
P 		1959.4
(-2.9)
P 		1937.9
(-3)
P 		1354
B 2296.9
(-1.2)
P 		2500.9
(-0.5)
P 		3410.1
(3)
P 		2422.2
(-0.8)
P 		1947
(-2.6)
P 		1831.7
(-3)
P 		1578
C 2513.8
(-0.2)
P 		2555.8
(0.1)
P 		3077.7
(3)
P 		2798
(1.4)
P 		2150
(-2.2)
P 		2015
(-3)
P 		1063
avr 2402.8
(-0.9) 		2493.9
(-0.5) 		3259.8
(3) 		2658.5
(0.3) 		2018.8
(-2.6) 		1928.2
(-3) 		1332
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 838
1 2 3 4 range
A 672.3
(3)
P 		522.2
(1.3)
P 		658.9
(2.8)
P 		148.9
(-3)
P 		523
B 523.3
(0.7)
P 		706
(2.7)
P 		732
(3)
P 		193.3
(-3)
P 		539
C 677
(0.7)
P 		986.4
(3)
P 		977.4
(2.9)
P 		171.9
(-3)
P 		815
avr 624.2
(1.4) 		738.2
(2.5) 		789.4
(3) 		171.4
(-3) 		618

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 490
1 2 3 4 5 6 range
A 442
(-3)
P 		862.5
(3)
P 		716.9
(0.9)
P 		698.8
(0.7)
P 		591.3
(-0.9)
P 		471.8
(-2.6)
P 		421
B 799.2
(2)
P 		832.4
(3)
P 		828.1
(2.9)
P 		641.6
(-3)
P 		791.1
(1.7)
P 		683
(-1.7)
P 		191
C 931.8
(3)
P 		779.9
(0.5)
P 		783.3
(0.6)
P 		562.7
(-3)
P 		695.7
(-0.8)
P 		674.6
(-1.2)
P 		369
avr 724.3
(0.2) 		824.9
(3) 		776.1
(1.6) 		634.4
(-2.3) 		692.7
(-0.7) 		609.8
(-3) 		215
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172842_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7717
Sequence Type Exemplar sequence
Representative Public ID Y56A3A.19 NCBI
Target Description Y56A3A.19 /REP_DB=WormBase Gene ID /WP=CE22587 /TR=Q9U241 /GB=CAB60498.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=acyl-carrier protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067148(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067148 NCBI Caenorhabditis elegans Y56A3A.19 (Y56A3A.19) mRNA, complete cds. 11/11 A 
SNAP00000035196 ENSEMBL cdna:SNAP chromosome:CEL140:III:11911024:11915586:-1 11/11 None
GENEFINDER00000035214 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11915129:11915586:-1 11/11 None
Y56A3A.19 ENSEMBL cdna:known chromosome:CEL140:III:11915027:11915590:-1 gene:Y56A3A.19 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071047 1/11 Cross Hyb Matching Probes A 
SNAP00000004016 1/11 Cross Hyb Matching Probes None
GENEFINDER00000004031 1/11 Cross Hyb Matching Probes None
F16B4.6 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11915124-11915582(-) 100.0 100.0
Public Domain and Genome References
Gene Title acyl-carrier protein
Ensembl Y56A3A.19
Entrez Gene 176622 Entrez gene
SwissProt Q9U241 EMBL-EBI
WormBase CE22587 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1589555_AT similar to Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (CI-SDAP) cfa
CANINE:1586950_AT similar to Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (CI-SDAP) cfa
CANINE_2:CFA.10920.1.S1_S_AT similar to Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (CI-SDAP) cfa
CANINE_2:CFA.10920.1.S1_X_AT similar to Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (CI-SDAP) cfa
CANINE_2:CFA.16090.1.A1_AT similar to Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (CI-SDAP) cfa
CANINE_2:CFA.9610.1.A1_AT similar to Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (CI-SDAP) cfa
CANINE_2:CFAAFFX.26929.1.S1_S_AT similar to Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (CI-SDAP) cfa
DROSOPHILA_2:1634955_AT mitochondrial acyl carrier protein 1 dm
DROSOPHILA_2:1624776_A_AT mitochondrial acyl carrier protein 1 dm
DROSOPHILA_2:1624715_AT mitochondrial acyl carrier protein 1 dm
DROSGENOME1:143658_AT mitochondrial acyl carrier protein 1 dm
CHICKEN:GGA.2627.1.S1_A_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa gga
HG-U133A:202077_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
HG-U133_PLUS_2:202077_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
HG-FOCUS:202077_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
HG-U133A_2:202077_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
HU35KSUBA:RC_AA152103_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
U133_X3P:G4826851_3P_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
HG-U95AV2:35297_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
HG-U95C:55938_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
HU35KSUBB:RC_R11499_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
HU35KSUBC:RC_D20172_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
MOUSE430_2:1447919_X_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOE430A:1447919_X_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOUSE430A_2:1447919_X_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MG-U74AV2:96909_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MG-U74AV2:161122_F_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOE430A:1435934_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOUSE430A_2:1435934_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOUSE430_2:1435934_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOE430A:1428159_S_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOUSE430A_2:1428159_S_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOUSE430_2:1428159_S_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOUSE430_2:1453565_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOE430B:1453565_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MG-U74BV2:116647_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (Ndufab1), mRNA mm
MOE430B:1458678_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (Ndufab1), mRNA mm
MOUSE430_2:1458678_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (Ndufab1), mRNA mm
MG-U74CV2:170724_R_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (Ndufab1), mRNA mm
MU11KSUBA:AA023445_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (Ndufab1), mRNA mm
MU19KSUBA:TC17949_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (Ndufab1), mRNA mm
MU19KSUBB:TC33901_S_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (Ndufab1), mRNA mm
RT-U34:AA799336_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (predicted) rn
RG-U34A:AA799336_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (predicted) rn
RAE230A:1389964_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (predicted) rn
RAT230_2:1389964_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6633 fatty acid biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
36 acyl carrier activity inferred from electronic annotation QuickGO AmiGO
48037 cofactor binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60497 Hypothetical protein Y56A3A.16 [Caenorhabditis elegans] ref|NP_499548.1| Y56A3A.16 [Caenorhabditis elegans] 0.0
blast CAE67736 Hypothetical protein CBG13311 [Caenorhabditis briggsae] 0.0
blast CAB60498 Hypothetical protein Y56A3A.19 [Caenorhabditis elegans] ref|NP_499549.1| Y56A3A.19 [Caenorhabditis elegans] 2.0E-67
blast CAB60498 Hypothetical protein Y56A3A.19 [Caenorhabditis elegans] ref|NP_499549.1| Y56A3A.19 [Caenorhabditis elegans] 3.0E-64
blast CAE67737 Hypothetical protein CBG13312 [Caenorhabditis briggsae] 1.0E-61
blast EAL29946 GA21583-PA [Drosophila pseudoobscura] 9.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR006163 EMBL-EBI Phosphopantetheine-binding domain 3.8E-16
Sequence
Target Sequence 
>C. ELEGANS:172842_X_AT
ctgctctccgcactgtttcagtgcgtgcactgagcaatgcgtccgtccaacaacgagtca
tcaccccaatactcctctccgcacagaaaccaagcttccaaatcagacaatactctgcaa
aggctccactgaccaaaaagacactcgaggagcgaattgtgttggttctctcactctacg
acaaaatcgacgcgaagaagctcacaatggactcggatttctcgaaagatctcggcctcg
actctctggatcacgtagaagttgtgatggcgatggaggaagagtttggattcgagattc
ccgacggagatgcggatcgcttcaagacgccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCTCTCCGCACTGTTTCAGTGCG 631 237 35 Antisense
AGTGCGTGCACTGAGCAATGCGTCC 306 59 54 Antisense
AAACCAAGCTTCCAAATCAGACAAT 482 125 121 Antisense
GACAATACTCTGCAAAGGCTCCACT 162 365 140 Antisense
GGCTCCACTGACCAAAAAGACACTC 668 539 156 Antisense
AATTGTGTTGGTTCTCTCACTCTAC 522 179 189 Antisense
AGCTCACAATGGACTCGGATTTCTC 595 79 233 Antisense
GATTTCTCGAAAGATCTCGGCCTCG 605 427 250 Antisense
CTCGACTCTCTGGATCACGTAGAAG 411 231 271 Antisense
GATTCCCGACGGAGATGCGGATCGC 627 431 330 Antisense
GATGCGGATCGCTTCAAGACGCCAC 642 413 343 Antisense
Sequence Source Affymetrix Proprietary Database