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[172841_x_at]

Description F44E8.1 /REP_DB=WormBase Gene ID /WP=CE04575 /TR=Q20400 /GB=AAB52510.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster 6grp_total > 12      4grp_total > 03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 398
1 2 3 4 range
A 109.6
(-2.2)
A 		100.8
(-2.4)
A 		65.9
(-3)
A 		401.8
(3)
M 		336
B 112.4
(3)
A 		69.4
(-2)
A 		60.7
(-3)
A 		78.4
(-0.9)
A 		52
C 81
(-2.9)
A 		87.5
(-2.8)
A 		77.6
(-3)
A 		459
(3)
P 		381
avr 101
(-2.2) 		85.9
(-2.6) 		68.1
(-3) 		313.1
(3) 		245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 50.9
(1.5)
A 		66
(3)
A 		54.8
(1.9)
A 		8.1
(-2.6)
A 		42.2
(0.7)
A 		4.2
(-3)
A 		62
B 75.6
(3)
A 		37.4
(-0.3)
A 		46.8
(0.5)
A 		29.8
(-1)
A 		24.6
(-1.4)
A 		6.1
(-3)
A 		70
C 52.8
(-0.6)
A 		123.4
(3)
A 		32.4
(-1.6)
A 		32.4
(-1.6)
A 		7.2
(-2.9)
A 		5.8
(-3)
A 		118
avr 59.8
(1.6) 		75.6
(3) 		44.7
(0.4) 		23.4
(-1.5) 		24.7
(-1.4) 		5.4
(-3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 39.9
(0.3)
A 		21.9
(-2.3)
A 		17.2
(-3)
A 		58.8
(3)
M 		42
B 35.9
(3)
A 		17.2
(-2.1)
A 		14.1
(-3)
A 		16.7
(-2.3)
A 		22
C 26.8
(-2.8)
A 		25.2
(-3)
A 		27.1
(-2.8)
A 		77.4
(3)
P 		52
avr 34.2
(-0.2) 		21.4
(-2.6) 		19.5
(-3) 		51
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 9.4
(-0.8)
A 		23.5
(3)
A 		11.9
(-0.1)
A 		2.1
(-2.7)
A 		12.7
(0.1)
A 		1
(-3)
A 		23
B 26.3
(3)
A 		12.5
(-0.5)
A 		11.4
(-0.7)
A 		7.9
(-1.6)
A 		10
(-1.1)
A 		2.3
(-3)
A 		24
C 19.6
(-0)
A 		37.6
(3)
A 		8.3
(-1.9)
A 		6.5
(-2.2)
A 		2.3
(-2.9)
A 		1.9
(-3)
A 		36
avr 18.4
(1.4) 		24.5
(3) 		10.5
(-0.7) 		5.5
(-2) 		8.3
(-1.3) 		1.7
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172841_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10781
Sequence Type Exemplar sequence
Representative Public ID F44E8.1 NCBI
Target Description F44E8.1 /REP_DB=WormBase Gene ID /WP=CE04575 /TR=Q20400 /GB=AAB52510.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F44E8.1
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F44E8.1 F44E8.1 /REP_DB=WormBase Gene ID /WP=CE04575 /TR=Q20400 /GB=AAB52510.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=reverse transcriptase None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078379 5/11 Cross Hyb Matching Probes A 
NM_077119 3/11 Cross Hyb Matching Probes A 
NM_064793 6/11 Cross Hyb Matching Probes A 
NM_071125 4/11 Cross Hyb Matching Probes None
NM_065740 4/11 Cross Hyb Matching Probes A 
NM_066128 5/11 Cross Hyb Matching Probes A 
NM_075970 6/11 Cross Hyb Matching Probes A 
NM_078455 5/11 Cross Hyb Matching Probes A 
NM_058672 4/11 Cross Hyb Matching Probes A 
NM_061681 6/11 Cross Hyb Matching Probes A 
NM_059054 6/11 Cross Hyb Matching Probes A 
GENEFINDER00000005898 4/11 Cross Hyb Matching Probes None
GENEFINDER00000043553 5/11 Cross Hyb Matching Probes None
SNAP00000043540 6/11 Cross Hyb Matching Probes None
SNAP00000039702 6/11 Cross Hyb Matching Probes None
GENEFINDER00000039704 6/11 Cross Hyb Matching Probes None
SNAP00000012049 6/11 Cross Hyb Matching Probes None
GENEFINDER00000012051 6/11 Cross Hyb Matching Probes None
SNAP00000043894 5/11 Cross Hyb Matching Probes None
GENEFINDER00000043904 5/11 Cross Hyb Matching Probes None
SNAP00000030989 5/11 Cross Hyb Matching Probes None
GENEFINDER00000030995 4/11 Cross Hyb Matching Probes None
GENEFINDER00000014760 4/11 Cross Hyb Matching Probes None
SNAP00000014756 4/11 Cross Hyb Matching Probes None
SNAP00000031879 6/11 Cross Hyb Matching Probes None
GENEFINDER00000031882 6/11 Cross Hyb Matching Probes None
SNAP00000000198 5/11 Cross Hyb Matching Probes None
GENEFINDER00000000200 5/11 Cross Hyb Matching Probes None
SNAP00000006732 6/11 Cross Hyb Matching Probes None
GENEFINDER00000006742 6/11 Cross Hyb Matching Probes None
SNAP00000028592 3/11 Cross Hyb Matching Probes None
GENEFINDER00000028599 3/11 Cross Hyb Matching Probes None
SNAP00000033705 5/11 Cross Hyb Matching Probes None
GENEFINDER00000033772 5/11 Cross Hyb Matching Probes None
SNAP00000037693 3/11 Cross Hyb Matching Probes None
GENEFINDER00000037709 3/11 Cross Hyb Matching Probes None
SNAP00000039289 5/11 Cross Hyb Matching Probes None
GENEFINDER00000039297 5/11 Cross Hyb Matching Probes None
SNAP00000043497 5/11 Cross Hyb Matching Probes None
GENEFINDER00000043506 5/11 Cross Hyb Matching Probes None
SNAP00000001526 5/11 Cross Hyb Matching Probes None
GENEFINDER00000001539 5/11 Cross Hyb Matching Probes None
SNAP00000003414 4/11 Cross Hyb Matching Probes None
GENEFINDER00000003424 4/11 Cross Hyb Matching Probes None
SNAP00000028144 4/11 Cross Hyb Matching Probes None
GENEFINDER00000028157 4/11 Cross Hyb Matching Probes None
SNAP00000032429 6/11 Cross Hyb Matching Probes None
GENEFINDER00000032435 6/11 Cross Hyb Matching Probes None
GENEFINDER00000034063 5/11 Cross Hyb Matching Probes None
SNAP00000034055 5/11 Cross Hyb Matching Probes None
SNAP00000007929 5/11 Cross Hyb Matching Probes None
GENEFINDER00000007942 3/11 Cross Hyb Matching Probes None
GENEFINDER00000009534 5/11 Cross Hyb Matching Probes None
SNAP00000009529 5/11 Cross Hyb Matching Probes None
SNAP00000043287 6/11 Cross Hyb Matching Probes None
GENEFINDER00000043303 6/11 Cross Hyb Matching Probes None
SNAP00000003534 6/11 Cross Hyb Matching Probes None
GENEFINDER00000003544 6/11 Cross Hyb Matching Probes None
SNAP00000035247 3/11 Cross Hyb Matching Probes None
GENEFINDER00000035253 3/11 Cross Hyb Matching Probes None
SNAP00000022302 6/11 Cross Hyb Matching Probes None
GENEFINDER00000022354 6/11 Cross Hyb Matching Probes None
Y71F9AL.3 4/11 Cross Hyb Matching Probes A 
F54D7.1 6/11 Cross Hyb Matching Probes A 
C08F1.9 6/11 Cross Hyb Matching Probes A 
Y53C12A.5 5/11 Cross Hyb Matching Probes None
K10F12.5 6/11 Cross Hyb Matching Probes A 
F52C9.6 4/11 Cross Hyb Matching Probes A 
C06E8.4 5/11 Cross Hyb Matching Probes A 
Y105C5A.7 5/11 Cross Hyb Matching Probes None
Y32G9A.9 4/11 Cross Hyb Matching Probes None
F44G3.3 4/11 Cross Hyb Matching Probes A 
Y102A11A.4 6/11 Cross Hyb Matching Probes A 
C24A3.7 3/11 Cross Hyb Matching Probes A 
B0302.3 5/11 Cross Hyb Matching Probes A 
C33E10.4 6/11 Cross Hyb Matching Probes None
F20B4.7 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:172841_X_AT
gattcgctgaccccagtaaagtctacttcggtagcccttcccccaccacccagctcgacg
acgtcgacgagtacatctacctcggccgtcaaatcaacgctcacaacaacttgatgccgg
aaattcatcgaagacgtcgagcagcatgggcagcgttcaatggaatcaagaacaccaccg
actccatcaccaacaagaagattcgtgcgaatctatccgattcaatcgtccttcccgctc
tcacctacggttcagaagcctggacattcaccaaagctctatccgaacgagtacgaatca
cacatgcctccctagaaagacggcttgtgggaatcacactcactcaacaacgagaacgag
atctccatcgagaagacatccgagtgatgtctcaagtaagagatccgctcaacttcgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCGCTGACCCCAGTAAAGTCTA 331 431 1001 Antisense
GTCGACGAGTACATCTACCTCGGCC 96 475 1063 Antisense
AACGCTCACAACAACTTGATGCCGG 470 145 1096 Antisense
GAAGACGTCGAGCAGCATGGGCAGC 586 339 1130 Antisense
ATCTATCCGATTCAATCGTCCTTCC 664 29 1211 Antisense
CTCACCTACGGTTCAGAAGCCTGGA 281 229 1240 Antisense
GAAGCCTGGACATTCACCAAAGCTC 257 345 1255 Antisense
GAACGAGTACGAATCACACATGCCT 575 347 1285 Antisense
ACATGCCTCCCTAGAAAGACGGCTT 636 103 1302 Antisense
GTGGGAATCACACTCACTCAACAAC 199 489 1327 Antisense
GTAAGAGATCCGCTCAACTTCGTGA 438 461 1396 Antisense
Sequence Source Affymetrix Proprietary Database