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[172840_x_at]

Description F47D2.2 /REP_DB=WormBase Gene ID /WP=CE10688 /TR=Q22985 /GB=AAG24110.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster 6grp_total > 10      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 4
(-3)
A 		35.5
(-0.8)
A 		3.8
(-3)
A 		90.8
(3)
P 		87
B 38.3
(0)
A 		12.4
(-2.1)
A 		2.1
(-3)
A 		74
(3)
P 		72
C 48.7
(-1.4)
A 		4.5
(-3)
A 		19.9
(-2.4)
A 		167.3
(3)
P 		163
avr 30.3
(-1.7) 		17.5
(-2.5) 		8.6
(-3) 		110.7
(3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 6.6
(-2.3)
A 		2.7
(-3)
A 		25.8
(0.7)
A 		2.4
(-3)
A 		40.4
(3)
A 		3.5
(-2.8)
A 		38
B 3.6
(-2.6)
A 		29.5
(2.1)
A 		34.2
(3)
A 		1.6
(-3)
A 		25.6
(1.4)
A 		3.1
(-2.7)
A 		33
C 1.1
(-3)
A 		53.9
(3)
P 		4.3
(-2.6)
A 		5
(-2.6)
A 		2.1
(-2.9)
A 		2.4
(-2.9)
A 		53
avr 3.8
(-2.8) 		28.7
(3) 		21.4
(1.3) 		3
(-3) 		22.7
(1.6) 		3
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 1.4
(-2.8)
A 		7.7
(0.3)
A 		1
(-3)
A 		13.3
(3)
P 		12
B 12.2
(1.6)
A 		3.1
(-2)
A 		0.5
(-3)
A 		15.8
(3)
P 		15
C 16.1
(0.3)
A 		1.3
(-3)
A 		6.9
(-1.8)
A 		28.2
(3)
P 		27
avr 9.9
(-0.4) 		4
(-2.6) 		2.8
(-3) 		19.1
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.2
(-2.7)
A 		1
(-2.8)
A 		5.6
(-0.4)
A 		0.6
(-3)
A 		12.2
(3)
A 		0.8
(-2.9)
A 		12
B 1.2
(-2.5)
A 		9.8
(2.6)
A 		8.3
(1.7)
A 		0.4
(-3)
A 		10.4
(3)
A 		1.2
(-2.5)
A 		10
C 0.4
(-3)
A 		16.5
(3)
P 		1.1
(-2.7)
A 		1
(-2.8)
A 		0.7
(-2.9)
A 		0.8
(-2.9)
A 		16
avr 0.9
(-2.9) 		9.1
(3) 		5
(0.1) 		0.7
(-3) 		7.8
(2.1) 		0.9
(-2.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172840_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15558
Sequence Type Exemplar sequence
Representative Public ID F47D2.2 NCBI
Target Description F47D2.2 /REP_DB=WormBase Gene ID /WP=CE10688 /TR=Q22985 /GB=AAG24110.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
B0513.8 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:13857429:13858365:-1 gene:B0513.8 9/11 A 
F47D2.2 ENSEMBL cdna:known chromosome:CEL140:V:4271847:4277606:1 gene:F47D2.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074340 7/11 Cross Hyb Matching Probes A 
NM_068042 3/11 Cross Hyb Matching Probes A 
NM_065683 6/11 Cross Hyb Matching Probes A 
SNAP00000001611 1/11 Cross Hyb Matching Probes None
GENEFINDER00000001626 2/11 Cross Hyb Matching Probes None
GENEFINDER00000030685 1/11 Cross Hyb Matching Probes None
F54D8.5 6/11 Cross Hyb Matching Probes A 
Y45F3A.6 5/11 Cross Hyb Matching Probes None
Y75B8A.41 3/11 Cross Hyb Matching Probes None
Y46C8AL.6 3/11 Cross Hyb Matching Probes A 
R13D7.5 6/11 Cross Hyb Matching Probes A 
T09F5.7 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4271846-4277606(+) 41.79 100.0
Public Domain and Genome References
Ensembl B0513.8
F47D2.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T25782 hypothetical protein F47D2.2 - Caenorhabditis elegans 1.0E-128
blast AAF60603 Hypothetical protein Y46C8AL.6 [Caenorhabditis elegans] ref|NP_500443.2| Y46C8AL.6 [Caenorhabditis elegans] 3.0E-91
blast AAG24111 Serpentine receptor, class t protein 38 [Caenorhabditis elegans] ref|NP_504178.1| Serpentine Receptor, class T family member (srt-38) [Caenorhabditis elegans] 4.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 5.0E-76
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 4.9E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
F47D2.2 3 20-42,57-79,86-108
Sequence
Target Sequence 
>C. ELEGANS:172840_X_AT
ggtctaaatcgacaaaactagcattaaacaatgataaaacggtatgcatatcactaggta
gaaatactacagagttccaatataccatagaaaatagtctaattactcggagtactattg
tcagagatctaggatttcaaattgagccaaaccttagcttttcaatgcattggaaaaaat
cagtaatgaaatctaagtttatgatccatcaaatattttcgaactattgtagtaaaaaca
caaggctccatacattactttacaaaacttttgtaagacccatacttgaatatggtactg
aagtaagtagtccgttgaacaaacaagatattaaagcaattgaatccgtacaaaactcgt
tcactaggaaactatacagcaggcaaaagggacaatacatcagaacagatgaccccgact
ataagagcgctattcaacgtaatgaactatttaacttatcaactttagaggctcggcgta
aagctattgataaagttttcttgtcgaaaatgctagtgaacaaagttgatattgactctg
accaatttttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCTAAATCGACAAAACTAGCATT 649 485 2534 Antisense
TCGGAGTACTATTGTCAGAGATCTA 179 607 2640 Antisense
GAGCCAAACCTTAGCTTTTCAATGC 52 385 2677 Antisense
AACCTTAGCTTTTCAATGCATTGGA 479 147 2683 Antisense
CACAAGGCTCCATACATTACTTTAC 547 193 2772 Antisense
GAATCCGTACAAAACTCGTTCACTA 430 329 2875 Antisense
ATCAGAACAGATGACCCCGACTATA 266 27 2932 Antisense
GACCCCGACTATAAGAGCGCTATTC 436 381 2944 Antisense
AACTTATCAACTTTAGAGGCTCGGC 298 1 2986 Antisense
GAGGCTCGGCGTAAAGCTATTGATA 232 405 3001 Antisense
GATATTGACTCTGACCAATTTTTCA 15 427 3061 Antisense
Sequence Source Affymetrix Proprietary Database