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[172839_x_at] Adenosine A3 receptor

Description ZK721.5 /REP_DB=WormBase Gene ID /WP=CE05109 /TR=Q9GYF4 /GB=AAG01567.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=adenosine A3 receptor
Cluster 6grp_total > 11      4grp_total > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 21.9
(-2.3)
A 		19.2
(-2.4)
A 		4.7
(-3)
A 		161.3
(3)
P 		157
B 53.3
(2.1)
P 		12.5
(-2)
A 		3
(-3)
A 		61.7
(3)
P 		59
C 33.5
(-2.8)
P 		27.7
(-3)
P 		30.3
(-2.9)
A 		172.6
(3)
P 		145
avr 36.2
(-1.8) 		19.8
(-2.6) 		12.7
(-3) 		131.9
(3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 4
(-2.8)
A 		39.4
(1.1)
P 		56.7
(3)
P 		37.9
(0.9)
A 		31.9
(0.3)
A 		2.3
(-3)
A 		54
B 33.5
(0.9)
P 		36.2
(1.3)
M 		38.3
(1.6)
P 		8.8
(-3)
A 		47
(3)
P 		8.6
(-3)
A 		38
C 34.4
(-1.8)
M 		102
(3)
P 		34.8
(-1.8)
A 		38.6
(-1.5)
A 		17.4
(-3)
A 		25.3
(-2.4)
A 		85
avr 24
(-1.5) 		59.2
(3) 		43.3
(1) 		28.4
(-0.9) 		32.1
(-0.5) 		12.1
(-3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 8
(-1.2)
A 		4.2
(-2.2)
A 		1.2
(-3)
A 		23.6
(3)
P 		22
B 17
(3)
P 		3.1
(-2.1)
A 		0.7
(-3)
A 		13.1
(1.6)
P 		16
C 11.1
(-2.1)
P 		8
(-3)
P 		10.6
(-2.3)
A 		29.1
(3)
P 		21
avr 12
(-0.4) 		5.1
(-2.7) 		4.2
(-3) 		21.9
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 0.7
(-3)
A 		14
(3)
P 		12.4
(2.3)
P 		9.6
(1)
A 		9.6
(1)
A 		0.6
(-3)
A 		13
B 11.6
(0.3)
P 		12
(0.5)
M 		9.3
(-0.5)
P 		2.3
(-3)
A 		19.1
(3)
P 		3.2
(-2.7)
A 		17
C 12.7
(-1.3)
M 		31.1
(3)
P 		8.9
(-2.2)
A 		7.8
(-2.5)
A 		5.6
(-3)
A 		8.5
(-2.3)
A 		26
avr 8.3
(-1.3) 		19
(3) 		10.2
(-0.5) 		6.6
(-2) 		11.4
(-0.1) 		4.1
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172839_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17041
Sequence Type Exemplar sequence
Representative Public ID ZK721.5 NCBI
Target Description ZK721.5 /REP_DB=WormBase Gene ID /WP=CE05109 /TR=Q9GYF4 /GB=AAG01567.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=adenosine A3 receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077085(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077085 NCBI Caenorhabditis elegans ZK721.4 (ZK721.4) mRNA, complete cds. 10/11 None
GENEFINDER00000024786 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8778796:8782221:1 9/11 None
ZK721.4.1 ENSEMBL cdna:known chromosome:CEL140:X:8778785:8781478:1 gene:ZK721.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8778782-8778944(+) 100.0 100.0
Public Domain and Genome References
Gene Title Adenosine A3 receptor
Ensembl ZK721.4
Entrez Gene 191417 Entrez gene
SwissProt Q9GYF4 EMBL-EBI
WormBase CE29651 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG01567 Hypothetical protein ZK721.4 [Caenorhabditis elegans] ref|NP_509486.1| ZK721.4 [Caenorhabditis elegans] 2.0E-97
blast AAG01567 Hypothetical protein ZK721.4 [Caenorhabditis elegans] ref|NP_509486.1| ZK721.4 [Caenorhabditis elegans] 4.0E-96
blast CAE69355 Hypothetical protein CBG15444 [Caenorhabditis briggsae] 2.0E-93
blast CAE69355 Hypothetical protein CBG15444 [Caenorhabditis briggsae] 4.0E-93
blast T27983 hypothetical protein ZK721.4 - Caenorhabditis elegans 3.0E-37
blast T27983 hypothetical protein ZK721.4 - Caenorhabditis elegans 6.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.9E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509486.1 4 15-37,50-72,97-119,139-161
ZK721.4.1 4 15-37,50-72,97-119,139-161
GENEFINDER00000024786 5 15-37,50-72,97-119,139-161,181-203
Sequence
Target Sequence 
>C. ELEGANS:172839_X_AT
atgcatgttcagatgtcaacatcaaactcaacgagtcgggtcagttttgtggatgtgatt
atcttctgtgggttggagtctcttggaatatgtgcaattcttggaaatttggctttgatt
atagtgctcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCATGTTCAGATGTCAACATCAA 463 43 13 Antisense
GATGTCAACATCAAACTCAACGAGT 389 409 24 Antisense
CTCAACGAGTCGGGTCAGTTTTGTG 228 227 39 Antisense
GAGTCGGGTCAGTTTTGTGGATGTG 222 401 45 Antisense
GTGGATGTGATTATCTTCTGTGGGT 64 491 61 Antisense
GATTATCTTCTGTGGGTTGGAGTCT 607 427 69 Antisense
TCTTCTGTGGGTTGGAGTCTCTTGG 203 617 74 Antisense
GTTGGAGTCTCTTGGAATATGTGCA 4 437 84 Antisense
GTCTCTTGGAATATGTGCAATTCTT 440 469 90 Antisense
CAATTCTTGGAAATTTGGCTTTGAT 480 179 107 Antisense
TTTGGCTTTGATTATAGTGCTCCTC 704 665 120 Antisense
Sequence Source Affymetrix Proprietary Database