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[172836_x_at] major sperm protein

Description ZK1248.17 /REP_DB=WormBase Gene ID /WP=CE02901 /TR=Q23428 /GB=AAC71098.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=major sperm protein
Cluster 6grp_total > 99      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 8.7
(-2.9)
A 		18.3
(-2.4)
A 		6.4
(-3)
A 		120.5
(3)
A 		114
B 38.9
(3)
A 		4.9
(-3)
A 		36.6
(2.6)
A 		6.8
(-2.7)
A 		34
C 10
(-3)
A 		24.6
(-2.3)
A 		28.9
(-2.1)
A 		134.2
(3)
A 		124
avr 19.2
(-2.7) 		15.9
(-3) 		24
(-2.3) 		87.2
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 361
1 2 3 4 5 6 range
A 4.2
(-3)
A 		9.5
(-2.9)
A 		72.1
(-1.9)
A 		99.1
(-1.4)
P 		302.7
(2)
P 		363.4
(3)
P 		359
B 33.7
(-2.9)
A 		27.2
(-3)
A 		40.7
(-2.7)
A 		59.3
(-2.4)
P 		265.1
(1.6)
P 		340.5
(3)
P 		313
C 30.9
(-2.7)
A 		34.4
(-2.6)
A 		12.8
(-3)
A 		37.8
(-2.6)
A 		364.9
(3)
P 		258.5
(1.2)
P 		352
avr 22.9
(-3) 		23.7
(-3) 		41.9
(-2.6) 		65.4
(-2.1) 		310.9
(2.8) 		320.8
(3) 		298
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 3.2
(-2.4)
A 		4
(-2.1)
A 		1.7
(-3)
A 		17.6
(3)
A 		16
B 12.4
(3)
A 		1.2
(-3)
A 		8.5
(0.9)
A 		1.4
(-2.9)
A 		11
C 3.3
(-3)
A 		7.1
(-1.8)
A 		10.1
(-0.9)
A 		22.6
(3)
A 		19
avr 6.3
(-1.7) 		4.1
(-3) 		6.8
(-1.3) 		13.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 0.8
(-3)
A 		3.4
(-2.8)
A 		15.7
(-2)
A 		25.1
(-1.4)
P 		91.4
(3)
P 		88.5
(2.8)
P 		91
B 11.7
(-2.9)
A 		9
(-3)
A 		9.9
(-3)
A 		15.7
(-2.7)
P 		107.7
(2)
P 		127
(3)
P 		118
C 11.4
(-2.6)
A 		10.5
(-2.6)
A 		3.2
(-3)
A 		7.6
(-2.8)
A 		118.1
(3)
P 		86.5
(1.3)
P 		115
avr 8
(-3) 		7.6
(-3) 		9.6
(-2.9) 		16.1
(-2.5) 		105.7
(3) 		100.7
(2.7) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172836_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4416
Sequence Type Exemplar sequence
Representative Public ID ZK1248.17 NCBI
Target Description ZK1248.17 /REP_DB=WormBase Gene ID /WP=CE02901 /TR=Q23428 /GB=AAC71098.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=major sperm protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062764(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062764 NCBI Caenorhabditis elegans ZK1248.17 (ZK1248.17) mRNA, complete cds. 11/11 None
SNAP00000041384 ENSEMBL cdna:SNAP chromosome:CEL140:II:5845219:5845506:-1 11/11 None
GENEFINDER00000041391 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5845219:5845506:-1 11/11 None
ZK1248.17 ENSEMBL cdna:known chromosome:CEL140:II:5845219:5845506:-1 gene:ZK1248.17 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068310 1/11 Cross Hyb Matching Probes A 
NM_069063 1/11 Cross Hyb Matching Probes A 
NM_062742 2/11 Cross Hyb Matching Probes A 
NM_062743 2/11 Cross Hyb Matching Probes A 
NM_062748 2/11 Cross Hyb Matching Probes A 
SNAP00000031244 2/11 Cross Hyb Matching Probes None
SNAP00000031245 2/11 Cross Hyb Matching Probes None
GENEFINDER00000031253 2/11 Cross Hyb Matching Probes None
GENEFINDER00000031258 2/11 Cross Hyb Matching Probes None
SNAP00000041369 2/11 Cross Hyb Matching Probes None
GENEFINDER00000041398 2/11 Cross Hyb Matching Probes None
GENEFINDER00000002661 1/11 Cross Hyb Matching Probes None
SNAP00000007231 1/11 Cross Hyb Matching Probes None
GENEFINDER00000007236 1/11 Cross Hyb Matching Probes None
SNAP00000029847 1/11 Cross Hyb Matching Probes None
GENEFINDER00000029849 1/11 Cross Hyb Matching Probes None
K05F1.7 2/11 Cross Hyb Matching Probes A 
K05F1.2 2/11 Cross Hyb Matching Probes A 
ZK1248.6 2/11 Cross Hyb Matching Probes A 
C09B9.6 1/11 Cross Hyb Matching Probes A 
Y59H11AM.1 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5845215-5845503(-) 100.0 100.0
Public Domain and Genome References
Gene Title major sperm protein
Ensembl ZK1248.17
Entrez Gene 191548 Entrez gene
SwissProt Q23428 EMBL-EBI
WormBase CE02901 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC71098 Hypothetical protein ZK1248.17 [Caenorhabditis elegans] ref|NP_495165.1| ZK1248.17 [Caenorhabditis elegans] 4.0E-52
blast AAK85492 Major sperm protein protein 57 [Caenorhabditis elegans] gb|AAB37555.1| Major sperm protein protein 55 [Caenorhabditis elegans] ref|NP_500713.1| Major Sperm Protein family member (msp-57) [Caenorhabditis elegans] ref|NP_500711.1| Major Sperm Protein family member (msp-55) [Caenorhabditis elegans] sp|Q17856|MSP55_CAEEL Major sperm protein 55/57 (MSP) 2.0E-32
blast AAA68714 Major sperm protein protein 63 [Caenorhabditis elegans] ref|NP_495143.1| Major Sperm Protein family member (msp-63) [Caenorhabditis elegans] sp|Q21244|MSP63_CAEEL Major sperm protein 63 (MSP) 3.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 2.5E-12
Sequence
Target Sequence 
>C. ELEGANS:172836_X_AT
gggttcggagacatccagacccagccgggcacgtattcaatgcaccatatgacgacaagc
acacgtatcacatcaaggttcctaaaaaacaagaccaccaacatgaagagacttggagtt
gatccaccatgtggagtgcccgaacccaaggaagatgtactgttggcagtttcatgtgat
gccttcgcattcggacaagacgacaccaacaacgaccgtatcaccgtcgaatggacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTTCGGAGACATCCAGACCCAGC 260 495 16 Antisense
CCGGGCACGTATTCAATGCACCATA 262 265 40 Antisense
GCACCATATGACGACAAGCACACGT 430 315 57 Antisense
CACGTATCACATCAAGGTTCCTAAA 286 199 77 Antisense
GTTGATCCACCATGTGGAGTGCCCG 83 439 133 Antisense
GAGTGCCCGAACCCAAGGAAGATGT 56 393 149 Antisense
GGAAGATGTACTGTTGGCAGTTTCA 97 529 165 Antisense
GGCAGTTTCATGTGATGCCTTCGCA 143 535 180 Antisense
ATGCCTTCGCATTCGGACAAGACGA 334 41 194 Antisense
AAGACGACACCAACAACGACCGTAT 319 153 212 Antisense
GACCGTATCACCGTCGAATGGACCA 84 377 229 Antisense
Sequence Source Affymetrix Proprietary Database