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[172832_x_at]

Description H38K22.5 /REP_DB=WormBase Gene ID /WP=CE18833 /CHR=3 /FEA=Sanger Annotation /DEF=Glycosyl transferases (HINXTON) TR:O61394 protein_id:CAA19707.1
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 70      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 61      6grp_total > 03      4grp_total > 59      6grp_cgc > 50      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 391.5
(1.7)
P 		437.8
(3)
P 		377
(1.3)
P 		219.4
(-3)
P 		218
B 344.5
(0.7)
P 		437.2
(3)
P 		345.3
(0.7)
P 		198.2
(-3)
P 		239
C 400.8
(2)
P 		443.8
(3)
P 		422.1
(2.5)
P 		195.4
(-3)
P 		248
avr 378.9
(1.5) 		439.6
(3) 		381.5
(1.5) 		204.3
(-3) 		235

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 454
1 2 3 4 5 6 range
A 460.2
(1.7)
P 		472.5
(1.9)
P 		375
(0.2)
P 		535.7
(3)
P 		371.8
(0.1)
P 		191.9
(-3)
P 		344
B 466.2
(2.4)
P 		408.3
(1.3)
P 		392.6
(1)
P 		501.8
(3)
P 		363.8
(0.5)
P 		172.6
(-3)
P 		329
C 505.8
(1.4)
P 		445.7
(0.6)
P 		448.8
(0.7)
P 		626
(3)
P 		382.1
(-0.2)
P 		172.4
(-3)
P 		454
avr 477.4
(1.8) 		442.2
(1.2) 		405.5
(0.6) 		554.5
(3) 		372.6
(0.1) 		179
(-3) 		376
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 142.6
(3)
P 		95
(0.4)
P 		98.6
(0.6)
P 		32.1
(-3)
P 		111
B 109.9
(3)
P 		108
(2.8)
P 		80
(0.4)
P 		42.2
(-3)
P 		68
C 132.7
(2.2)
P 		127.6
(2)
P 		147.1
(3)
P 		32.9
(-3)
P 		114
avr 128.4
(3) 		110.2
(1.8) 		108.6
(1.7) 		35.7
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 84.8
(-1.1)
P 		168
(3)
P 		81.7
(-1.3)
P 		135.9
(1.4)
P 		112.2
(0.2)
P 		46.7
(-3)
P 		121
B 162.2
(3)
P 		135.9
(1.4)
P 		95.3
(-1.1)
P 		132.9
(1.2)
P 		147.8
(2.1)
P 		64.4
(-3)
P 		98
C 187.5
(3)
P 		136
(0.6)
P 		114.2
(-0.4)
P 		125.9
(0.2)
P 		123.6
(0)
P 		57.7
(-3)
P 		130
avr 144.8
(2.9) 		146.6
(3) 		97.1
(-0.3) 		131.6
(2) 		127.9
(1.8) 		56.3
(-3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172832_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6860
Sequence Type Exemplar sequence
Representative Public ID H38K22.5 NCBI
Target Description H38K22.5 /REP_DB=WormBase Gene ID /WP=CE18833 /CHR=3 /FEA=Sanger Annotation /DEF=Glycosyl transferases (HINXTON) TR:O61394 protein_id:CAA19707.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027473(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027473 NCBI Caenorhabditis elegans GLYcosylation related family member (gly-6) (gly-6) mRNA, complete cds. 11/11 None
SNAP00000023313 ENSEMBL cdna:SNAP chromosome:CEL140:III:4324769:4327911:-1 11/11 None
GENEFINDER00000023314 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4324769:4327911:-1 11/11 None
H38K22.5a ENSEMBL cdna:known chromosome:CEL140:III:4324577:4327957:-1 gene:H38K22.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027474 6/11 Cross Hyb Matching Probes None
NM_001027475 7/11 Cross Hyb Matching Probes None
H38K22.5c.1 7/11 Cross Hyb Matching Probes A 
H38K22.5b 6/11 Cross Hyb Matching Probes A 
H38K22.5c.2 7/11 Cross Hyb Matching Probes A 
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175558 3 1 NM_001027473 172832_x_at (11)
NM_001027474 175629_s_at (11), 175655_s_at (11)
NM_001027475 175629_s_at (11), 175655_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4324768-4327911(-) 100.0 100.0
Public Domain and Genome References
Ensembl H38K22.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19707 Hypothetical protein H38K22.5a [Caenorhabditis elegans] ref|NP_001022644.1| GLYcosylation related family member (gly-6) [Caenorhabditis elegans] sp|O61394|GALT6_CAEEL Probable N-acetylgalactosaminyltransferase 6 (Protein-UDP acetylgalactosaminyltransferase 6) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 6) (pp-GaNTase 6) gb|AAC13674.1| GLY6a [Caenorhabditis elegans] 0.0
blast CAC42317 Hypothetical protein H38K22.5b [Caenorhabditis elegans] ref|NP_001022645.1| GLYcosylation related family member (gly-6) [Caenorhabditis elegans] gb|AAC13675.1| GLY6b [Caenorhabditis elegans] 0.0
blast CAE71226 Hypothetical protein CBG18092 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 6.8E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022644.1 1 17-39
H38K22.5a 1 17-39
SNAP00000023313 1 17-39
GENEFINDER00000023314 1 17-39
Sequence
Target Sequence 
>C. ELEGANS:172832_X_AT
cgctcctcaagctcatcgaatgcgctcatcgattgacgtatcggaacgagtggagctccg
aaaaaagttgaattgcaaaagtttcaagtggtatctacaaaatgtgtttcaagatcactt
tctgccaactccattggatagattcggaaggatgacgtcatcatcaaattcaagtgtttg
tctggcatggactctccgctcgtcaggaatcaaaactgcttcaactgcggattgcctcaa
aatcttccataaaactcagctgtggctctacactggcgaccgtcgaatacgtacagatga
gcatctatgcttatcagttgttcaacttcttcacacaacttccgattggaaaattcaatt
gaaagagtgtgcaggttttgatacagaatactgggattttaagccaaagatcgggcgatt
ccaaaaccgaaagacaggattgtgtctggcttcaccggacattttcgatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCTCCTCAAGCTCATCGAATGCGC 481 255 1293 Antisense
GAATGCGCTCATCGATTGACGTATC 369 329 1310 Antisense
GTTTCAAGATCACTTTCTGCCAACT 693 449 1398 Antisense
AGTGTTTGTCTGGCATGGACTCTCC 436 59 1465 Antisense
ACTCTCCGCTCGTCAGGAATCAAAA 625 99 1483 Antisense
AAACTGCTTCAACTGCGGATTGCCT 168 127 1505 Antisense
GCGGATTGCCTCAAAATCTTCCATA 399 293 1519 Antisense
CCATAAAACTCAGCTGTGGCTCTAC 657 269 1539 Antisense
TGTTCAACTTCTTCACACAACTTCC 88 563 1611 Antisense
GACAGGATTGTGTCTGGCTTCACCG 422 369 1725 Antisense
TGGCTTCACCGGACATTTTCGATCC 49 545 1739 Antisense
Sequence Source Affymetrix Proprietary Database