[Home] | [Total List]

[172827_x_at] reverse transcriptase

Description C31E10.2 /REP_DB=WormBase Gene ID /WP=CE08502 /TR=Q93311 /GB=CAB01728.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster 6grp_total > 93      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 20
(3)
A 		5.1
(-3)
A 		5
(-3)
A 		15.9
(1.4)
A 		15
B 20.3
(-0.4)
A 		9.1
(-2.5)
A 		6.1
(-3)
A 		39.3
(3)
A 		33
C 12
(-2.3)
A 		12.1
(-2.3)
A 		2.4
(-3)
A 		81.5
(3)
A 		79
avr 17.4
(-1.1) 		8.8
(-2.4) 		4.5
(-3) 		45.6
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 9.1
(-2.4)
A 		7.8
(-3)
A 		12.8
(-0.9)
A 		21.8
(3)
A 		15.6
(0.3)
A 		16.8
(0.9)
A 		14
B 17.8
(2.3)
A 		17.4
(2.1)
A 		16.5
(1.8)
A 		5.1
(-3)
A 		19.5
(3)
A 		7.1
(-2.2)
A 		14
C 14.2
(-2.2)
A 		17.8
(-1.6)
A 		9.1
(-3)
A 		11.6
(-2.6)
A 		46.4
(3)
A 		28.6
(0.1)
A 		37
avr 13.7
(-2.6) 		14.3
(-2.4) 		12.8
(-3) 		12.8
(-3) 		27.2
(3) 		17.5
(-1) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 7.3
(3)
A 		1.1
(-3)
A 		1.3
(-2.8)
A 		2.3
(-1.8)
A 		6
B 6.5
(1.4)
A 		2.3
(-2.2)
A 		1.4
(-3)
A 		8.4
(3)
A 		7
C 4
(-1.5)
A 		3.5
(-1.7)
A 		0.8
(-3)
A 		13.7
(3)
A 		13
avr 5.9
(1.1) 		2.3
(-2) 		1.2
(-3) 		8.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.7
(-3)
A 		2.8
(-1.3)
A 		2.8
(-1.3)
A 		5.5
(3)
A 		4.7
(1.7)
A 		4.1
(0.8)
A 		4
B 6.2
(1.5)
A 		5.8
(1.1)
A 		4
(-0.5)
A 		1.3
(-3)
A 		7.9
(3)
A 		2.6
(-1.8)
A 		7
C 5.2
(-1.6)
A 		5.4
(-1.5)
A 		2.3
(-3)
A 		2.3
(-3)
A 		15
(3)
A 		9.6
(0.4)
A 		13
avr 4.4
(-1.6) 		4.7
(-1.4) 		3
(-3) 		3
(-3) 		9.2
(3) 		5.4
(-0.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172827_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17764
Sequence Type Exemplar sequence
Representative Public ID C31E10.2 NCBI
Target Description C31E10.2 /REP_DB=WormBase Gene ID /WP=CE08502 /TR=Q93311 /GB=CAB01728.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=reverse transcriptase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077928(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077928 NCBI Caenorhabditis elegans C31E10.2 (C31E10.2) mRNA, complete cds. 11/11 None
SNAP00000027025 ENSEMBL cdna:SNAP chromosome:CEL140:X:13982220:13982881:-1 10/11 None
GENEFINDER00000027034 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13982220:13985345:-1 9/11 None
C31E10.2 ENSEMBL cdna:known chromosome:CEL140:X:13982220:13982881:-1 gene:C31E10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078442 4/11 Cross Hyb Matching Probes A 
NM_058839 6/11 Cross Hyb Matching Probes A 
NM_063156 4/11 Cross Hyb Matching Probes A 
SNAP00000013113 6/11 Cross Hyb Matching Probes None
GENEFINDER00000013124 4/11 Cross Hyb Matching Probes None
SNAP00000016726 4/11 Cross Hyb Matching Probes None
GENEFINDER00000016739 4/11 Cross Hyb Matching Probes None
T03F1.4 6/11 Cross Hyb Matching Probes A 
K02A2.6 4/11 Cross Hyb Matching Probes A 
F39B3.3 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title reverse transcriptase
Ensembl C31E10.2
Entrez Gene 183086 Entrez gene
SwissProt Q93311 EMBL-EBI
WormBase CE08502 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01727 Hypothetical protein C31E10.1 [Caenorhabditis elegans] ref|NP_510330.1| C31E10.1 [Caenorhabditis elegans] 4.0E-91
blast CAB01728 Hypothetical protein C31E10.2 [Caenorhabditis elegans] ref|NP_510329.1| C31E10.2 [Caenorhabditis elegans] 1.0E-90
blast CAB01728 Hypothetical protein C31E10.2 [Caenorhabditis elegans] ref|NP_510329.1| C31E10.2 [Caenorhabditis elegans] 6.0E-85
blast CAB01728 Hypothetical protein C31E10.2 [Caenorhabditis elegans] ref|NP_510329.1| C31E10.2 [Caenorhabditis elegans] 9.0E-79
blast CAB07366 Hypothetical protein F22G12.2 [Caenorhabditis elegans] ref|NP_493303.1| F22G12.2 [Caenorhabditis elegans] 2.0E-76
blast AAC46707 Hypothetical protein K02A2.6 [Caenorhabditis elegans] ref|NP_495557.1| K02A2.6 [Caenorhabditis elegans] sp|Q09575|YRD6_CAEEL Hypothetical protein K02A2.6 in chromosome II 9.0E-74
blast AAC46707 Hypothetical protein K02A2.6 [Caenorhabditis elegans] ref|NP_495557.1| K02A2.6 [Caenorhabditis elegans] sp|Q09575|YRD6_CAEEL Hypothetical protein K02A2.6 in chromosome II 4.0E-68
blast CAB07366 Hypothetical protein F22G12.2 [Caenorhabditis elegans] ref|NP_493303.1| F22G12.2 [Caenorhabditis elegans] 2.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000027034 4 5-24,45-67,115-137,212-234
Sequence
Target Sequence 
>C. ELEGANS:172827_X_AT
gattcggactcgttatggtgactacagtcgctcgtctgttaatcctagattgtcttccga
ttcttttggttttgtgggggagagtggcggtgatgagatgtcccgcaatgatgatccaat
tgttacttcgaatggttccagtattgatgttaatcgtggaagccgaatcacaagtgaact
aaagaagaaagaaagcaatgcagtcagaggacagccacgtggatcctgctctccaaccaa
caacgacgtttcggcgcccagatacgcctcacgttctcactcgaccaccgaaccaagcca
ttccgtaagacgaagttcgcgaattcgacgagtaccggacagatatccgcgtgggtcgac
atccacacagctcggtcaagcctccactcgcaacggatgtcgatatacagcttctggtcg
aaacccctcttgccaagggaatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCGGACTCGTTATGGTGACTAC 294 431 36 Antisense
GACTACAGTCGCTCGTCTGTTAATC 537 373 55 Antisense
GATTGTCTTCCGATTCTTTTGGTTT 458 435 83 Antisense
GAGATGTCCCGCAATGATGATCCAA 615 395 130 Antisense
CAGTCAGAGGACAGCCACGTGGATC 480 205 236 Antisense
TCTCCAACCAACAACGACGTTTCGG 523 605 265 Antisense
CGAACCAAGCCATTCCGTAAGACGA 331 251 324 Antisense
GTACCGGACAGATATCCGCGTGGGT 631 455 367 Antisense
CCTCCACTCGCAACGGATGTCGATA 203 267 416 Antisense
TATACAGCTTCTGGTCGAAACCCCT 335 659 439 Antisense
GAAACCCCTCTTGCCAAGGGAATCG 257 355 455 Antisense
Sequence Source Affymetrix Proprietary Database