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[172812_x_at] chitinase domains

Description ZK938.6 /REP_DB=WormBase Gene ID /WP=CE02400 /TR=Q23675 /GB=CAA90145.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase domains
Cluster 6grp_high1_10_10 > 01      4grp_high_8_8 > 28      6grp_total > 04      4grp_total > 28      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 62.8
(-1.6)
A 		61.6
(-1.8)
A 		54.1
(-3)
A 		92.3
(3)
P 		38
B 96.9
(3)
A 		91.6
(2.5)
P 		33.4
(-3)
A 		50.2
(-1.4)
P 		64
C 83.6
(-0.7)
P 		82.8
(-0.7)
A 		61.8
(-3)
P 		117.5
(3)
P 		56
avr 81.1
(2.1) 		78.7
(1.7) 		49.8
(-3) 		86.7
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 180.4
(3)
P 		94.5
(-0.4)
M 		120.8
(0.6)
P 		104.6
(0)
P 		120.9
(0.6)
P 		28.7
(-3)
A 		152
B 79.8
(0.8)
P 		76.9
(0.1)
P 		71.2
(-1.1)
M 		62.8
(-3)
A 		89.9
(3)
P 		64.8
(-2.6)
P 		27
C 61
(-0)
A 		82.5
(2.4)
P 		71.8
(1.2)
A 		87.5
(3)
P 		80.5
(2.2)
P 		34.7
(-3)
A 		53
avr 107.1
(3) 		84.6
(0.9) 		87.9
(1.2) 		85
(0.9) 		97.1
(2.1) 		42.7
(-3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 22.8
(3)
A 		13.4
(-3)
A 		14.1
(-2.6)
A 		13.5
(-2.9)
P 		9
B 30.9
(3)
A 		22.6
(0.9)
P 		7.7
(-3)
A 		10.7
(-2.2)
P 		23
C 27.7
(3)
P 		23.8
(0)
A 		21.5
(-1.7)
P 		19.8
(-3)
P 		8
avr 27.1
(3) 		19.9
(-0.4) 		14.4
(-3) 		14.7
(-2.9) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 33.3
(2.3)
P 		33.6
(2.4)
M 		26.3
(0.9)
P 		26.5
(1)
P 		36.5
(3)
P 		7
(-3)
A 		30
B 27.8
(0.4)
P 		25.6
(-0.3)
P 		17.3
(-2.8)
M 		16.6
(-3)
A 		36.5
(3)
P 		24.2
(-0.7)
P 		20
C 22.6
(1.6)
A 		25.2
(2.7)
P 		18.3
(-0.2)
A 		17.6
(-0.5)
P 		26
(3)
P 		11.6
(-3)
A 		14
avr 27.9
(1.4) 		28.1
(1.4) 		20.6
(-1) 		20.2
(-1.1) 		33
(3) 		14.3
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172812_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2910
Sequence Type Exemplar sequence
Representative Public ID ZK938.6 NCBI
Target Description ZK938.6 /REP_DB=WormBase Gene ID /WP=CE02400 /TR=Q23675 /GB=CAA90145.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=chitinase domains
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063721(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063721 NCBI Caenorhabditis elegans ZK938.6 (ZK938.6) mRNA, complete cds. 11/11 None
SNAP00000044679 ENSEMBL cdna:SNAP chromosome:CEL140:II:9843291:9844277:-1 11/11 None
GENEFINDER00000044690 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9839213:9846271:-1 11/11 None
ZK938.6 ENSEMBL cdna:known chromosome:CEL140:II:9843291:9846361:-1 gene:ZK938.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063724 2/11 Cross Hyb Matching Probes A 
NM_063726 1/11 Cross Hyb Matching Probes A 
NM_063725 3/11 Cross Hyb Matching Probes A 
SNAP00000001367 2/11 Cross Hyb Matching Probes None
SNAP00000001368 3/11 Cross Hyb Matching Probes None
SNAP00000001369 1/11 Cross Hyb Matching Probes None
SNAP00000001371 1/11 Cross Hyb Matching Probes None
SNAP00000001372 1/11 Cross Hyb Matching Probes None
GENEFINDER00000001390 5/11 Cross Hyb Matching Probes None
C08H9.10 2/11 Cross Hyb Matching Probes A 
C08H9.12 3/11 Cross Hyb Matching Probes A 
C08H9.11 1/11 Cross Hyb Matching Probes A 
C08H9.9 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9843287-9846358(-) 100.0 100.0
Public Domain and Genome References
Gene Title chitinase domains
Ensembl ZK938.6
Entrez Gene 191470 Entrez gene
SwissProt Q23675 EMBL-EBI
WormBase CE02400 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90145 Hypothetical protein ZK938.6 [Caenorhabditis elegans] ref|NP_496122.1| ZK938.6 [Caenorhabditis elegans] 0.0
blast CAA91149 Hypothetical protein C08H9.12 [Caenorhabditis elegans] ref|NP_496126.1| C08H9.12 [Caenorhabditis elegans] 1.0E-173
blast CAA90145 Hypothetical protein ZK938.6 [Caenorhabditis elegans] ref|NP_496122.1| ZK938.6 [Caenorhabditis elegans] 1.0E-172
blast CAA91147 Hypothetical protein C08H9.10 [Caenorhabditis elegans] ref|NP_496125.1| C08H9.10 [Caenorhabditis elegans] 1.0E-166
blast CAA91149 Hypothetical protein C08H9.12 [Caenorhabditis elegans] ref|NP_496126.1| C08H9.12 [Caenorhabditis elegans] 1.0E-166
blast CAA90146 Hypothetical protein ZK938.7 [Caenorhabditis elegans] ref|NP_496121.1| ZK938.7 [Caenorhabditis elegans] 1.0E-164
Protein Domains
Database ID Description E-Value
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.7E-90
Pfam IPR000698 EMBL-EBI Arrestin 5.8E-5
Pfam IPR002156 EMBL-EBI RNase H 2.0E-6
Pfam IPR000698 EMBL-EBI Arrestin 4.7E-17
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 4.6E-37
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.8E-16
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 8.3E-50
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.2E-44
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 7.9E-98
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000044690 1 172-194
Sequence
Target Sequence 
>C. ELEGANS:172812_X_AT
gtgatctccaggaatgtcaaccatttatccaaattggtggaattctcaaattttgttgac
tttattaacatttactcgtttaatagttacttatatcaagttggaccagactccccattg
tatggaggaggaagtagaaacgtcgatgagattatgaaatattatatttgtaaaactggt
caaccaagtaaattcaatataattgtctcgttccacgcaacatattgggaaggtgccgaa
ttaccattacgagatgattctgatgatatattcaaagaccaaaactcggcaaaaggagga
tttgctgtacgttggagagagctacttcaacagaaatgggacatgagcaacattaaattc
cacaatttaacaaaaacctcatatatgtggattcctggtccacctacccggtttatgact
ttagaagacgaaaaaagtttgagagaaaaaaatcgatatgttgctgatcataatattgga
ggaataaccatgtggacaattgatcaggatgatggtgatcacactcttttgaaagttgta
tcttctgctgaattatgcactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATCTCCAGGAATGTCAACCATT 669 483 982 Antisense
GTCAACCATTTATCCAAATTGGTGG 363 463 997 Antisense
GTTGACTTTATTAACATTTACTCGT 211 439 1036 Antisense
TATCAAGTTGGACCAGACTCCCCAT 413 659 1075 Antisense
GGACCAGACTCCCCATTGTATGGAG 288 523 1084 Antisense
TAATTGTCTCGTTCCACGCAACATA 260 635 1181 Antisense
GAAGGTGCCGAATTACCATTACGAG 94 333 1210 Antisense
GGAGGATTTGCTGTACGTTGGAGAG 306 515 1276 Antisense
TATGTGGATTCCTGGTCCACCTACC 525 653 1365 Antisense
GGATGATGGTGATCACACTCTTTTG 668 513 1488 Antisense
GTATCTTCTGCTGAATTATGCACTG 223 455 1519 Antisense
Sequence Source Affymetrix Proprietary Database