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[172810_x_at]

Description ZC477.1_rc /REP_DB=WormBase Gene ID /WP=CE28161 /GEN=ssq-3 /TR=Q23347 /GB=AAK19014.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 89      4grp_total > 51      6grp_cgc > 59      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 20.8
(-2.3)
A 		36.6
(3)
A 		18.6
(-3)
A 		23.7
(-1.3)
A 		18
B 13.5
(-1.7)
A 		34.4
(3)
A 		17.5
(-0.8)
A 		7.7
(-3)
A 		27
C 33.3
(0.7)
A 		29.4
(-0.4)
A 		41.5
(3)
A 		20.4
(-3)
A 		21
avr 22.5
(-1.1) 		33.5
(3) 		25.9
(0.2) 		17.3
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 27.3
(2.5)
A 		13.3
(-0.9)
A 		18.8
(0.4)
A 		4.9
(-2.9)
A 		29.6
(3)
A 		4.4
(-3)
A 		25
B 10.5
(-3)
A 		17.9
(-1.1)
A 		15.7
(-1.7)
A 		18.1
(-1.1)
A 		20.9
(-0.4)
A 		34.3
(3)
A 		24
C 10
(-3)
A 		16.7
(-1.8)
A 		19.1
(-1.4)
A 		10.4
(-2.9)
A 		14.8
(-2.2)
A 		44.4
(3)
A 		34
avr 15.9
(-1.3) 		16
(-1.2) 		17.9
(-0.5) 		11.1
(-3) 		21.8
(0.9) 		27.7
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 7.6
(2.5)
A 		8
(3)
A 		4.9
(-1.1)
A 		3.5
(-3)
A 		5
B 4.3
(-0.7)
A 		8.5
(3)
A 		4.1
(-0.9)
A 		1.7
(-3)
A 		7
C 11
(1.1)
A 		8.5
(-0.2)
A 		14.5
(3)
A 		3.4
(-3)
A 		11
avr 7.6
(2.2) 		8.3
(3) 		7.8
(2.4) 		2.9
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5
(-0)
A 		4.7
(-0.2)
A 		4.1
(-0.7)
A 		1.2
(-2.9)
A 		8.9
(3)
A 		1.1
(-3)
A 		8
B 3.7
(-3)
A 		6
(-1.5)
A 		3.8
(-2.9)
A 		4.8
(-2.3)
A 		8.5
(0.2)
A 		12.8
(3)
A 		9
C 3.7
(-2.2)
A 		5.1
(-1.6)
A 		4.9
(-1.7)
A 		2.1
(-3)
A 		4.8
(-1.7)
A 		14.8
(3)
A 		13
avr 4.1
(-1.8) 		5.3
(-0.7) 		4.3
(-1.6) 		2.7
(-3) 		7.4
(1.1) 		9.6
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172810_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28137
Sequence Type Exemplar sequence
Representative Public ID ZC477.1 NCBI
Target Description ZC477.1_rc /REP_DB=WormBase Gene ID /WP=CE28161 /GEN=ssq-3 /TR=Q23347 /GB=AAK19014.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) ZC477.1
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZC477.1 ZC477.1_rc /REP_DB=WormBase Gene ID /WP=CE28161 /GEN=ssq-3 /TR=Q23347 /GB=AAK19014.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068712 11/11 Negative Strand Matching Probes A 
SNAP00000039651 11/11 Negative Strand Matching Probes None
GENEFINDER00000039664 10/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7111621-7112832(-) 100.0 100.0
chrIV:5016504-5017720(-) 95.35 98.16
Public Domain and Genome References
Ensembl ZC477.1
Sequence
Target Sequence 
>C. ELEGANS:172810_X_AT
attgcagtcatggtactagctcctcctggagcacctccgacggctgtcatggtcgagaca
ccacgtggtgctcctcccacagcagtcattgtcgaagatccaccaattggtgctccgcca
accgcagtcatcgtggatgaccctcccattggtgcaccaccgacagctgtcattgttgat
gctccacgtggggctcctccaattgcggtcatggtagacgctccggatggagctccgcca
acagcagtcatggtggaagctccagatggcgctcctccaactgcagtcattgttgatcct
cctcccattggggctccaccgacagctgtcatcgttgatgctccacgaggtgctcctccg
atagcggtcatggttgaagctcccgatggcgctccaccaactgcagtcattgtgcttgat
cctccaacaggggctccaccaacagccgtcatggttgatgctccgcgaggagctcctccg
acagcagtcatagtcgaagaccctccagctggtgccgctggtgcgcctcctccagcaggt
cctcctccgactccgaaatatgctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCAGTCATGGTACTAGCTCCTC 121 7 320 Antisense
CCTCCGACGGCTGTCATGGTCGAGA 546 267 353 Antisense
AGCTGTCATTGTTGATGCTCCACGT 195 81 484 Antisense
GCTCCTCCAATTGCGGTCATGGTAG 304 299 512 Antisense
AACTGCAGTCATTGTTGATCCTCCT 703 141 598 Antisense
ACAGCTGTCATCGTTGATGCTCCAC 189 109 641 Antisense
AGCGGTCATGGTTGAAGCTCCCGAT 427 81 682 Antisense
GCTCCACCAACTGCAGTCATTGTGC 197 299 710 Antisense
AACAGCCGTCATGGTTGATGCTCCG 245 137 760 Antisense
CAGTCATAGTCGAAGACCCTCCAGC 330 207 804 Antisense
CTCCTCCGACTCCGAAATATGCTGA 291 235 861 Antisense
Sequence Source Affymetrix Proprietary Database