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[172808_x_at]

Description F30A10.8A /REP_DB=WormBase Gene ID /WP=CE09809 /TR=Q93646 /GB=CAB03025.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=beta1-syntrophin
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 11      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 51      6grp_total > 23      4grp_total > 54      6grp_cgc > 61      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 653
1 2 3 4 range
A 925.1
(3)
P 		504.8
(-1)
P 		461.3
(-1.5)
P 		301.4
(-3)
P 		624
B 766.9
(3)
P 		573.2
(0.7)
P 		527.1
(0.1)
P 		271.9
(-3)
P 		495
C 917.2
(3)
P 		560.9
(-0.4)
P 		627.3
(0.3)
P 		279.3
(-3)
P 		638
avr 869.7
(3) 		546.3
(-0.3) 		538.6
(-0.4) 		284.2
(-3) 		586

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 544
1 2 3 4 5 6 range
A 604.8
(0.5)
P 		822.4
(3)
P 		662.1
(1.1)
P 		663.8
(1.2)
P 		377.7
(-2.2)
P 		307.4
(-3)
P 		515
B 839.6
(3)
P 		645.3
(0.9)
P 		720.2
(1.7)
P 		527
(-0.4)
P 		475.5
(-1)
P 		295.6
(-3)
P 		544
C 775.8
(3)
P 		607
(0.7)
P 		665.1
(1.5)
P 		594.2
(0.6)
P 		430.6
(-1.6)
P 		328.6
(-3)
P 		447
avr 740.1
(3) 		691.6
(2.3) 		682.5
(2.2) 		595
(1) 		427.9
(-1.4) 		310.5
(-3) 		430
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 293
1 2 3 4 range
A 336.8
(3)
P 		109.6
(-1.7)
P 		120.6
(-1.4)
P 		44.1
(-3)
P 		293
B 244.6
(3)
P 		141.6
(-0.3)
P 		122.1
(-0.9)
P 		57.9
(-3)
P 		187
C 303.6
(3)
P 		161.3
(-0.3)
P 		218.6
(1)
P 		47.1
(-3)
P 		257
avr 295
(3) 		137.5
(-0.9) 		153.8
(-0.5) 		49.7
(-3) 		245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 218
1 2 3 4 5 6 range
A 111.5
(-2)
P 		292.5
(3)
P 		144.2
(-1.1)
P 		168.4
(-0.4)
P 		114
(-1.9)
P 		74.8
(-3)
P 		218
B 292.2
(3)
P 		214.8
(0.4)
P 		174.9
(-0.9)
P 		139.6
(-2)
P 		193.2
(-0.3)
P 		110.2
(-3)
P 		182
C 287.6
(3)
P 		185.2
(-0.5)
P 		169.3
(-1)
P 		119.5
(-2.7)
P 		139.3
(-2)
P 		110
(-3)
P 		178
avr 230.4
(3) 		230.8
(3) 		162.8
(-0.1) 		142.5
(-1) 		148.8
(-0.7) 		98.3
(-3) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172808_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2046
Sequence Type Exemplar sequence
Representative Public ID F30A10.8A NCBI
Target Description F30A10.8A /REP_DB=WormBase Gene ID /WP=CE09809 /TR=Q93646 /GB=CAB03025.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=beta1-syntrophin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060121(9), NM_060120(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060121 NCBI Caenorhabditis elegans F30A10.8b (beta1-syntrophin) mRNA, complete cds. 9/11 A 
NM_060120 NCBI Caenorhabditis elegans F30A10.8a (beta1-syntrophin) mRNA, complete cds. 11/11 A 
SNAP00000021995 ENSEMBL cdna:SNAP chromosome:CEL140:I:9511002:9512943:1 11/11 None
GENEFINDER00000022001 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9511002:9512684:1 9/11 None
F30A10.8b ENSEMBL cdna:known chromosome:CEL140:I:9509389:9512726:1 gene:F30A10.8 9/11 A 
F30A10.8a ENSEMBL cdna:known chromosome:CEL140:I:9509445:9513197:1 gene:F30A10.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9509375-9512874(+) 100.0 100.0
Public Domain and Genome References
Ensembl F30A10.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03028 Hypothetical protein F30A10.8b [Caenorhabditis elegans] ref|NP_492522.1| F30A10.8b [Caenorhabditis elegans] 0.0
blast CAB03025 Hypothetical protein F30A10.8a [Caenorhabditis elegans] ref|NP_492521.1| F30A10.8a [Caenorhabditis elegans] sp|Q93646|SNT1_CAEEL Syntrophin-1 0.0
blast CAE56710 Hypothetical protein CBG24496 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 8.6E-21
Pfam IPR001849 EMBL-EBI Pleckstrin-like 5.7E-13
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 8.6E-21
Pfam IPR001849 EMBL-EBI Pleckstrin-like 5.7E-13
Sequence
Target Sequence 
>C. ELEGANS:172808_X_AT
gagccaagactagtacgtcctctggtggcaacaagagtcgttcagacaagttctcgaact
gcgccagtaattaaaggtctcactgatgtgatctctttccgtatgagaactggaactcaa
caaggtgttcggacacatacgatccgggtagaaactcatgcagaactggcacgatgggtt
cgtgcagtagtgatcggtggatatgaagcatgtctttctacatctcaagtctctgctcct
tgtctttggcgaggcgaatcatgcgaactaatagttaatctagacaatggaatatcatta
ctttcgtcgactggagaggtactgtggcaacattcgtttgaaacgattcgcgccaccggc
gatgatggtggtcgttttctctgggtcgattttggaccaccacatggtgaacaggaattg
gatttgctaaattccgcaaagccagtcgtgttcattcttcattcatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCAAGACTAGTACGTCCTCTGG 212 385 829 Antisense
CAAGTTCTCGAACTGCGCCAGTAAT 377 185 875 Antisense
CTCACTGATGTGATCTCTTTCCGTA 205 229 907 Antisense
GAAGCATGTCTTTCTACATCTCAAG 685 341 1033 Antisense
CTCCTTGTCTTTGGCGAGGCGAATC 166 235 1064 Antisense
AATATCATTACTTTCGTCGACTGGA 645 173 1119 Antisense
GAGGTACTGTGGCAACATTCGTTTG 584 401 1144 Antisense
TCGTTTGAAACGATTCGCGCCACCG 608 601 1162 Antisense
GTCGTTTTCTCTGGGTCGATTTTGG 598 471 1199 Antisense
AAATTCCGCAAAGCCAGTCGTGTTC 96 115 1257 Antisense
GTCGTGTTCATTCTTCATTCATTTC 342 473 1273 Antisense
Sequence Source Affymetrix Proprietary Database