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[172807_x_at]

Description C37A2.7 /REP_DB=WormBase Gene ID /WP=CE08616 /TR=O01504 /GB=AAB52450.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ribosomal protein
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 20      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 41      4grp_total > 17      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19454
1 2 3 4 range
A 28846.3
(-3)
P 		36106
(-0.6)
P 		35821.9
(-0.7)
P 		47039.6
(3)
P 		18193
B 29977.6
(-3)
P 		33371.7
(-0.1)
P 		36850.8
(3)
P 		36886.9
(3)
P 		6909
C 27586.1
(-3)
P 		30933.7
(-1.5)
P 		27600.3
(-3)
P 		40810.3
(3)
P 		13224
avr 28803.3
(-3) 		33470.5
(-0.8) 		33424.3
(-0.8) 		41578.9
(3) 		12776

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14402
1 2 3 4 5 6 range
A 32292.3
(3)
P 		24879.5
(-1.5)
P 		30662.6
(2)
P 		25246.5
(-1.2)
P 		22605.3
(-2.8)
P 		22325.4
(-3)
P 		9967
B 26891.2
(2.3)
P 		25573.9
(1.3)
P 		27882
(3)
P 		25961
(1.6)
P 		20201.6
(-2.6)
P 		19689.5
(-3)
P 		8193
C 23442.1
(0.2)
P 		25975.6
(1.7)
P 		26649.2
(2.1)
P 		28172.3
(3)
P 		21149.6
(-1.1)
P 		17890.1
(-3)
P 		10282
avr 27541.9
(2.4) 		25476.3
(0.9) 		28397.9
(3) 		26459.9
(1.6) 		21318.8
(-2) 		19968.3
(-3) 		8430
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3622
1 2 3 4 range
A 10503
(3)
P 		7837.6
(-1.4)
P 		9364.5
(1.1)
P 		6885.7
(-3)
P 		3617
B 9559.6
(3)
P 		8242
(-1.7)
P 		8539.2
(-0.6)
P 		7860.6
(-3)
P 		1699
C 9131.8
(1.9)
P 		8893.6
(1.4)
P 		9619.6
(3)
P 		6881.3
(-3)
P 		2738
avr 9731.5
(3) 		8324.4
(-0.3) 		9174.4
(1.7) 		7209.2
(-3) 		2522

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3921
1 2 3 4 5 6 range
A 5952.8
(-2.1)
P 		8848.4
(3)
P 		6677.7
(-0.8)
P 		6403.1
(-1.3)
P 		6821.3
(-0.6)
P 		5435.5
(-3)
P 		3413
B 9356.8
(3)
P 		8512.5
(1)
P 		6770.6
(-3)
P 		6876.2
(-2.8)
P 		8207.6
(0.3)
P 		7342.1
(-1.7)
P 		2586
C 8689
(3)
P 		7925.9
(1.5)
P 		6782.7
(-0.8)
P 		5665.5
(-3)
P 		6843.7
(-0.7)
P 		5988.9
(-2.4)
P 		3024
avr 7999.5
(1.8) 		8428.9
(3) 		6743.7
(-1.7) 		6314.9
(-2.8) 		7290.9
(-0.1) 		6255.5
(-3) 		2173
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172807_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1312
Sequence Type Exemplar sequence
Representative Public ID C37A2.7 NCBI
Target Description C37A2.7 /REP_DB=WormBase Gene ID /WP=CE08616 /TR=O01504 /GB=AAB52450.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ribosomal protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059543
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000014189 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6796217:6797870:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059543 7/11 Cross Hyb Matching Probes A 
SNAP00000014179 8/11 Cross Hyb Matching Probes None
C37A2.7.1 7/11 Cross Hyb Matching Probes None
C37A2.7.2 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6797224-6797799(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52451 Hypothetical protein C37A2.6 [Caenorhabditis elegans] ref|NP_491943.1| C37A2.6 [Caenorhabditis elegans] 1.0E-125
blast CAE67314 Hypothetical protein CBG12771 [Caenorhabditis briggsae] 1.0E-99
blast XP_608933 PREDICTED: similar to C37A2.6 [Bos taurus] 4.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR001813 EMBL-EBI Ribosomal protein 60S 6.5E-14
Sequence
Target Sequence 
>C. ELEGANS:172807_X_AT
gtacttgggagcttatcttctcgccaccctcggtggaaatgcctccccatctgcacaaga
tgtccttaaggtcctcgaagccggaggtctcgactgcgacatggagaacgccaactccgt
cgtcgatgccctcaagggaaagactatctccgaggttatcgcccagggcaaggtcaagct
cagctcggtcccatcaggcggatctgccccagctgctgccgccccatcaggaggagccgc
accaaaaggcaagttttgtttcactaattatgacccacatttaaaaataatccattgcgg
agcacgatttaaaatttcgaagcagtacaggtggcccgaagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACTTGGGAGCTTATCTTCTCGCC 93 461 18 Antisense
CTTCTCGCCACCCTCGGTGGAAATG 507 219 34 Antisense
CTCCCCATCTGCACAAGATGTCCTT 95 235 60 Antisense
TGTCCTTAAGGTCCTCGAAGCCGGA 471 557 78 Antisense
ACATGGAGAACGCCAACTCCGTCGT 484 107 116 Antisense
AAGACTATCTCCGAGGTTATCGCCC 418 153 157 Antisense
TATCGCCCAGGGCAAGGTCAAGCTC 229 657 174 Antisense
CATCAGGAGGAGCCGCACCAAAAGG 649 207 242 Antisense
GTTTCACTAATTATGACCCACATTT 22 451 275 Antisense
AATAATCCATTGCGGAGCACGATTT 394 171 303 Antisense
GAAGCAGTACAGGTGGCCCGAAGAG 397 341 336 Antisense
Sequence Source Affymetrix Proprietary Database