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[172805_x_at]

Description C26C9.2 /REP_DB=WormBase Gene ID /WP=CE16880 /CHR=4 /FEA=Sanger Annotation /DEF=ribosomal protein (ST.LOUIS) TR:O44945 protein_id:AAB97528.1
Cluster 6grp_total > 45      4grp_total > 24      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 413
1 2 3 4 range
A 422.4
(-3)
M 		488.6
(-1)
P 		582.9
(1.8)
A 		625
(3)
A 		203
B 337.6
(-3)
A 		396.3
(-1.2)
A 		531.7
(3)
A 		522.3
(2.7)
P 		194
C 380.7
(-3)
A 		492.5
(-1.2)
A 		518.4
(-0.8)
P 		750.9
(3)
P 		370
avr 380.2
(-3) 		459.1
(-1.1) 		544.3
(0.9) 		632.7
(3) 		253

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 298.2
(-0.6)
A 		314.6
(2.1)
A 		302.7
(0.2)
P 		283.6
(-3)
A 		286.9
(-2.5)
A 		319.8
(3)
A 		36
B 239.2
(-2.5)
A 		353.7
(3)
A 		347
(2.7)
A 		229
(-3)
A 		320.9
(1.4)
M 		264.7
(-1.3)
A 		125
C 339.7
(3)
P 		261.8
(-0.7)
A 		300.4
(1.1)
A 		306.8
(1.4)
A 		213.2
(-3)
P 		332.3
(2.6)
P 		127
avr 292.4
(-0.3) 		310
(2.1) 		316.7
(3) 		273.1
(-3) 		273.7
(-2.9) 		305.6
(1.5) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 153.8
(3)
M 		106.1
(-1.6)
P 		152.4
(2.9)
A 		91.5
(-3)
A 		62
B 107.7
(-0.7)
A 		97.9
(-3)
A 		123.2
(3)
A 		111.3
(0.2)
P 		25
C 126
(-3)
A 		141.6
(-1.3)
A 		180.7
(3)
P 		126.6
(-2.9)
P 		55
avr 129.2
(-0.2) 		115.2
(-2.2) 		152.1
(3) 		109.8
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 55
(-3)
A 		111.9
(3)
A 		65.9
(-1.9)
P 		71.9
(-1.2)
A 		86.6
(0.3)
A 		77.9
(-0.6)
A 		57
B 83.2
(-1.1)
A 		117.7
(1.9)
A 		84.3
(-1)
A 		60.7
(-3)
A 		130.4
(3)
M 		98.7
(0.3)
A 		70
C 125.9
(3)
P 		79.9
(-1.3)
A 		76.5
(-1.6)
A 		61.7
(-3)
A 		69
(-2.3)
P 		111.2
(1.6)
P 		64
avr 88
(0.6) 		103.2
(3) 		75.6
(-1.3) 		64.8
(-3) 		95.3
(1.8) 		95.9
(1.9) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172805_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9977
Sequence Type Exemplar sequence
Representative Public ID C26C9.2 NCBI
Target Description C26C9.2 /REP_DB=WormBase Gene ID /WP=CE16880 /CHR=4 /FEA=Sanger Annotation /DEF=ribosomal protein (ST.LOUIS) TR:O44945 protein_id:AAB97528.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070600(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070600 NCBI Caenorhabditis elegans T06A10.2 (T06A10.2) mRNA, complete cds. 11/11 A 
GENEFINDER00000024464 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16895686:16896636:1 11/11 None
T06A10.2 ENSEMBL cdna:known chromosome:CEL140:IV:16895327:16896038:1 gene:T06A10.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060616 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000010053 3/11 Cross Hyb Matching Probes None
SNAP00000036888 2/11 Cross Hyb Matching Probes None
Y47H9C.14 1/11 Cross Hyb Matching Probes A 
Y37H9A.5 2/11 Cross Hyb Matching Probes None
B0513.3.1 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11905847-11906000(+) 92.52 92.52
chrIV:16895692-16895839(+) 100.0 100.0
chrI:13804434-13804581(-) 97.96 97.96
Public Domain and Genome References
Gene Title
Ensembl T06A10.2
Entrez Gene 188158 Entrez gene
SwissProt Q965G6 EMBL-EBI
WormBase CE36609 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK73892 Hypothetical protein T06A10.2 [Caenorhabditis elegans] ref|NP_503001.3| T06A10.2 [Caenorhabditis elegans] 2.0E-64
blast T33652 hypothetical protein T06A10.2 - Caenorhabditis elegans 2.0E-49
blast AAK73892 Hypothetical protein T06A10.2 [Caenorhabditis elegans] ref|NP_503001.3| T06A10.2 [Caenorhabditis elegans] 3.0E-48
blast T33652 hypothetical protein T06A10.2 - Caenorhabditis elegans 3.0E-48
blast CAB76744 Hypothetical protein Y47H9C.14 [Caenorhabditis elegans] ref|NP_493017.1| Y47H9C.14 [Caenorhabditis elegans] 8.0E-11
blast CAB76744 Hypothetical protein Y47H9C.14 [Caenorhabditis elegans] ref|NP_493017.1| Y47H9C.14 [Caenorhabditis elegans] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR002673 EMBL-EBI Ribosomal L29e protein 1.6E-10
Pfam IPR002673 EMBL-EBI Ribosomal L29e protein 1.6E-10
Sequence
Target Sequence 
>C. ELEGANS:172805_X_AT
caacacgatgcatggaagtcgaagaatcgcaccaatcacaaccagaacaacaaggctcac
cgtattggaatcacgaagccaaagatcttcctctccatagaaggaagtcgacgccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACACGATGCATGGAAGTCGAAGA 215 187 13 Antisense
GAAGTCGAAGAATCGCACCAATCAC 503 335 27 Antisense
TCGAAGAATCGCACCAATCACAACC 378 601 31 Antisense
TCGCACCAATCACAACCAGAACAAC 678 599 39 Antisense
CAACCAGAACAACAAGGCTCACCGT 191 185 51 Antisense
GAACAACAAGGCTCACCGTATTGGA 237 351 57 Antisense
AAGGCTCACCGTATTGGAATCACGA 574 161 64 Antisense
TCACCGTATTGGAATCACGAAGCCA 119 627 69 Antisense
ACGAAGCCAAAGATCTTCCTCTCCA 289 91 85 Antisense
AAAGATCTTCCTCTCCATAGAAGGA 433 121 93 Antisense
CTCCATAGAAGGAAGTCGACGCCAA 342 233 105 Antisense
Sequence Source Affymetrix Proprietary Database