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[172799_x_at] cuticlin

Description F53F1.5 /REP_DB=WormBase Gene ID /WP=CE10940 /GEN=cut-2 /TR=P92003 /GB=CAB03133.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=cuticlin
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 43      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 24      6grp_total > 20      4grp_total > 49      6grp_highest_sub > 02_03      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25022
1 2 3 4 range
A 191.9
(-3)
P 		20440.4
(1.9)
P 		25214.1
(3)
P 		647.7
(-2.9)
P 		25022
B 207.5
(-3)
P 		20243.7
(2.3)
P 		22886
(3)
P 		596.6
(-2.9)
P 		22679
C 251.9
(-3)
P 		19872.6
(3)
P 		18771.5
(2.7)
P 		571
(-2.9)
P 		19621
avr 217.1
(-3) 		20185.6
(2.4) 		22290.5
(3) 		605.1
(-2.9) 		22073

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5004
1 2 3 4 5 6 range
A 1601.8
(-3)
P 		6222.7
(3)
P 		4535.9
(0.8)
P 		4074.5
(0.2)
P 		2587.5
(-1.7)
P 		2011.4
(-2.5)
P 		4621
B 2217.2
(-2.3)
P 		5581.6
(3)
P 		4321.1
(1)
P 		3790.4
(0.2)
P 		2428.3
(-2)
P 		1763.3
(-3)
P 		3818
C 1970.7
(-1.9)
P 		5183.4
(3)
P 		4894.1
(2.6)
P 		2538.3
(-1)
P 		3163.7
(-0.1)
P 		1218.6
(-3)
P 		3965
avr 1929.9
(-2.6) 		5662.6
(3) 		4583.7
(1.4) 		3467.7
(-0.3) 		2726.5
(-1.4) 		1664.4
(-3) 		3998
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6525
1 2 3 4 range
A 69.9
(-3)
P 		4437
(1)
P 		6591.5
(3)
P 		94.8
(-3)
P 		6522
B 66.2
(-3)
P 		4999.7
(2.7)
P 		5303.2
(3)
P 		127.1
(-2.9)
P 		5237
C 83.4
(-3)
P 		5713.5
(2.2)
P 		6542.5
(3)
P 		96.3
(-3)
P 		6459
avr 73.2
(-3) 		5050.1
(1.9) 		6145.7
(3) 		106.1
(-3) 		6073

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1918
1 2 3 4 5 6 range
A 295.3
(-3)
P 		2213.1
(3)
P 		987.8
(-0.8)
P 		1033.4
(-0.7)
P 		780.8
(-1.5)
P 		489.7
(-2.4)
P 		1918
B 771.5
(-2.4)
P 		1857.9
(3)
P 		1049.3
(-1)
P 		1003.9
(-1.3)
P 		986.6
(-1.4)
P 		657.5
(-3)
P 		1200
C 730.4
(-1.4)
P 		1581.6
(3)
P 		1245.6
(1.3)
P 		510.4
(-2.5)
P 		1023.7
(0.1)
P 		407.9
(-3)
P 		1174
avr 599.1
(-2.6) 		1884.2
(3) 		1094.2
(-0.5) 		849.2
(-1.5) 		930.4
(-1.2) 		518.4
(-3) 		1366
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172799_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12598
Sequence Type Exemplar sequence
Representative Public ID F53F1.5 NCBI
Target Description F53F1.5 /REP_DB=WormBase Gene ID /WP=CE10940 /GEN=cut-2 /TR=P92003 /GB=CAB03133.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=cuticlin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073924(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073924 NCBI Caenorhabditis elegans F53F1.5 (cuticlin) mRNA, complete cds. 11/11 None
SNAP00000038181 ENSEMBL cdna:SNAP chromosome:CEL140:V:13417692:13418528:1 11/11 None
GENEFINDER00000038193 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13417692:13418528:1 11/11 None
F53F1.5 ENSEMBL cdna:known chromosome:CEL140:V:13417654:13418713:1 gene:F53F1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13417691-13418528(+) 96.76 100.0
Public Domain and Genome References
Gene Title cuticlin
Ensembl F53F1.5
Entrez Gene 179823 Entrez gene
SwissProt P34682 EMBL-EBI
WormBase CE10940 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:172799_X_AT
ctttccttcttccatctggaggaggtggaggatgtggatgcgctccaccaccaccaccac
caccatgcggatgcggagcaccagctcttccaccactccaactcccacgctttgagctcc
caagactttctcttccatccctcggaggaggatgcggaggaccagctccatgcgccgctg
ccccaatcgctgccccagcaggaggatatgccaccgccccagctgctccagtcggaggat
acgctaccggaccagctttcggaggagccgccccaatcggaggagcttaccaagccgccc
cagctttcgtaggagccgccccagttggaggagcttaccaatccgggccagctttcggag
gagccgccccagccggaggagcctaccaatctggaccagctttcggaggagccgccccag
ccgtcggaggagcttaccaggccggacaagccgctgttgaatctgccccactcggaggag
ctgccccagccggaggataccaagcatctgccccagctgccgttgaagccgctccagccg
ccggaggatatcaggctgctgccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTCCTTCTTCCATCTGGAGGAGG 484 223 59 Antisense
TCTCTTCCATCCCTCGGAGGAGGAT 264 613 187 Antisense
AATCGCTGCCCCAGCAGGAGGATAT 494 167 243 Antisense
CCCAGCAGGAGGATATGCCACCGCC 611 255 252 Antisense
CCCAGCTGCTCCAGTCGGAGGATAC 673 257 276 Antisense
TACCGGACCAGCTTTCGGAGGAGCC 353 647 303 Antisense
TTGGAGGAGCTTACCAATCCGGGCC 194 653 383 Antisense
TCTGGACCAGCTTTCGGAGGAGCCG 125 607 448 Antisense
CAGCCGTCGGAGGAGCTTACCAGGC 633 185 476 Antisense
CGGACAAGCCGCTGTTGAATCTGCC 75 243 501 Antisense
GCCGGAGGATATCAGGCTGCTGCCC 331 283 598 Antisense
Sequence Source Affymetrix Proprietary Database