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[172796_x_at]

Description K06A4.1 /REP_DB=WormBase Gene ID /WP=CE06105 /TR=Q21252 /GB=CAA94781.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=zinc metalloprotease
Cluster 6grp_total > 61      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 35.8
(-3)
A 		94.5
(2.1)
A 		96.7
(2.3)
A 		104.8
(3)
A 		69
B 18.7
(-2.3)
A 		76.8
(3)
A 		11.4
(-3)
A 		50.8
(0.6)
A 		65
C 20.4
(-3)
A 		104.1
(2.9)
A 		69.4
(0.4)
A 		105.7
(3)
A 		85
avr 25
(-3) 		91.8
(3) 		59.2
(0.1) 		87.1
(2.6) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 10
(-3)
A 		46
(0.8)
A 		43.7
(0.6)
A 		66.9
(3)
A 		40.6
(0.2)
A 		66.4
(2.9)
A 		57
B 44.4
(-1.1)
A 		60.8
(0.3)
A 		62.4
(0.4)
A 		92.9
(3)
A 		22.4
(-3)
A 		34.1
(-2)
A 		71
C 42.8
(-2.7)
A 		80.4
(0.9)
A 		103.2
(3)
A 		57.7
(-1.3)
A 		71.5
(0)
A 		39.3
(-3)
A 		64
avr 32.4
(-3) 		62.4
(1.5) 		69.8
(2.6) 		72.5
(3) 		44.8
(-1.1) 		46.6
(-0.9) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 13
(-3)
A 		20.5
(0.7)
A 		25.3
(3)
A 		15.3
(-1.9)
A 		12
B 6
(-1.8)
A 		19
(3)
A 		2.6
(-3)
A 		10.8
(0)
A 		16
C 6.8
(-3)
A 		29.9
(3)
A 		24.2
(1.5)
A 		17.8
(-0.1)
A 		23
avr 8.6
(-3) 		23.1
(3) 		17.4
(0.6) 		14.6
(-0.5) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 1.9
(-3)
A 		16.4
(2.8)
A 		9.5
(0)
A 		17
(3)
A 		12.3
(1.1)
A 		16.2
(2.7)
A 		15
B 15.4
(-0.6)
A 		20.2
(1.3)
A 		15.1
(-0.7)
A 		24.6
(3)
A 		9.1
(-3)
A 		12.7
(-1.6)
A 		16
C 15.8
(-1.3)
A 		24.5
(2.3)
A 		26.3
(3)
A 		11.6
(-3)
A 		23.1
(1.7)
A 		13.2
(-2.3)
A 		15
avr 11
(-3) 		20.4
(3) 		17
(0.8) 		17.7
(1.3) 		14.8
(-0.6) 		14
(-1.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172796_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12340
Sequence Type Exemplar sequence
Representative Public ID K06A4.1 NCBI
Target Description K06A4.1 /REP_DB=WormBase Gene ID /WP=CE06105 /TR=Q21252 /GB=CAA94781.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=zinc metalloprotease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073045, NM_058945
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000041743 ENSEMBL cdna:SNAP chromosome:CEL140:V:9484839:9485766:1 11/11 None
GENEFINDER00000041749 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9484839:9491457:1 10/11 None
K06A4.8 ENSEMBL cdna:pseudogene chromosome:CEL140:V:9484765:9485766:1 gene:K06A4.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073045 3/11 Cross Hyb Matching Probes A 
NM_058945 2/11 Cross Hyb Matching Probes A 
SNAP00000009714 2/11 Cross Hyb Matching Probes None
GENEFINDER00000009720 2/11 Cross Hyb Matching Probes None
SNAP00000041742 3/11 Cross Hyb Matching Probes None
GENEFINDER00000041751 2/11 Cross Hyb Matching Probes None
Y47D9A.3 2/11 Cross Hyb Matching Probes A 
K06A4.6 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9480796-9485766(+) 100.0 100.0
Public Domain and Genome References
Ensembl K06A4.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE72176 Hypothetical protein CBG19283 [Caenorhabditis briggsae] 1.0E-151
blast CAA94785 Hypothetical protein K06A4.2 [Caenorhabditis elegans] ref|NP_505447.1| K06A4.2 [Caenorhabditis elegans] 1.0E-125
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000041743 1 10-32
GENEFINDER00000041749 5 36-58,368-390,410-432,439-461,481-500
Sequence
Target Sequence 
>C. ELEGANS:172796_X_AT
gggtcaacgcgaaaactccagagctggcaaaggaaagtctggaagatcgaaacgctccaa
gcgtgataagaaaaaccagaactcgaagagacagaagaaggctccagctggtggagctaa
agtaaacaattttgagagaatccaaagaaaacataataattattttcggccgccaactcc
tgcttctcaatcagctcctgccaagggtggtgccggtgctgcaaagtctgcgacctcgaa
agaaggatctcagagaatcaaaaagtcgaaggaaccttcggagcgagagaaagcaccaaa
agaggacaagaacgagggatcttcgagagccaaaaaggcttcaaaggagaaccaggatgc
tgataagaagcctgaggaagaaggaaagactccgccaccagccaaccgtgatgatgaaac
taaggcgccagctccagtcgaaccatcaccaaagcctgaggaagaggtcaaaccggcaac
cccaccaccaactactactccgcctgcacaaccagacaaccaagaaaacatgggatccgt
gtacctcgacaatggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTCAACGCGAAAACTCCAGAGCT 316 495 924 Antisense
GGAAGATCGAAACGCTCCAAGCGTG 671 531 964 Antisense
TAATAATTATTTTCGGCCGCCAACT 626 631 1077 Antisense
CAATCAGCTCCTGCCAAGGGTGGTG 110 181 1111 Antisense
GAAGGAACCTTCGGAGCGAGAGAAA 395 333 1191 Antisense
GAAGAAGGAAAGACTCCGCCACCAG 517 339 1300 Antisense
GCCACCAGCCAACCGTGATGATGAA 19 281 1317 Antisense
TGATGAAACTAAGGCGCCAGCTCCA 254 567 1335 Antisense
TCGAACCATCACCAAAGCCTGAGGA 343 599 1361 Antisense
TGAGGAAGAGGTCAAACCGGCAACC 653 567 1380 Antisense
GGATCCGTGTACCTCGACAATGGAA 624 511 1456 Antisense
Sequence Source Affymetrix Proprietary Database