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[172795_x_at] RNA-binding protein /// ---

Description C06A5.5 /REP_DB=WormBase Gene ID /WP=CE07952 /TR=O01475 /GB=AAB52444.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=RNA-binding protein
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_high_8_8 > 11      6grp_highest_nonorm > 92      6grp_total > 96      4grp_total > 14      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 245
1 2 3 4 range
A 280.8
(0.5)
P 		162.8
(-2.7)
A 		149.9
(-3)
P 		374.1
(3)
P 		224
B 274.7
(3)
P 		175.6
(-3)
P 		202.4
(-1.4)
P 		257.6
(2)
P 		99
C 335.3
(1.4)
P 		225.4
(-1.5)
P 		169.1
(-3)
P 		395
(3)
P 		226
avr 296.9
(1.4) 		187.9
(-2.5) 		173.8
(-3) 		342.2
(3) 		168

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 362
1 2 3 4 5 6 range
A 184.2
(-3)
P 		255.3
(-1.5)
P 		310.3
(-0.3)
P 		301.6
(-0.5)
P 		384.3
(1.3)
P 		466.3
(3)
P 		282
B 246.7
(-2.5)
P 		217.1
(-3)
P 		235.7
(-2.7)
P 		319.6
(-1.1)
P 		434.8
(1)
P 		546.4
(3)
P 		329
C 218.5
(-3)
P 		256.4
(-1.6)
P 		270.5
(-1.1)
P 		304.8
(0.1)
P 		382.9
(3)
P 		363.7
(2.3)
P 		164
avr 216.5
(-3) 		242.9
(-2.3) 		272.2
(-1.6) 		308.7
(-0.7) 		400.7
(1.6) 		458.8
(3) 		242
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 102.2
(3)
P 		35.3
(-3)
A 		39.2
(-2.7)
P 		54.8
(-1.3)
P 		67
B 87.6
(3)
P 		43.4
(-3)
P 		46.9
(-2.5)
P 		54.9
(-1.4)
P 		44
C 111
(3)
P 		64.8
(-2.3)
P 		58.9
(-3)
P 		66.6
(-2.1)
P 		52
avr 100.3
(3) 		47.8
(-3) 		48.3
(-2.9) 		58.8
(-1.7) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 34
(-3)
P 		90.8
(1.2)
P 		67.6
(-0.5)
P 		76.5
(0.1)
P 		116
(3)
P 		113.5
(2.8)
P 		82
B 85.8
(-1.8)
P 		72.3
(-2.4)
P 		57.2
(-3)
P 		84.7
(-1.9)
P 		176.7
(1.9)
P 		203.8
(3)
P 		147
C 81
(-1.1)
P 		78.2
(-1.4)
P 		68.8
(-2.3)
P 		61.3
(-3)
P 		123.9
(3)
P 		121.8
(2.8)
P 		63
avr 66.9
(-2.8) 		80.4
(-1.8) 		64.5
(-3) 		74.2
(-2.3) 		138.9
(2.5) 		146.4
(3) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172795_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2361
Sequence Type Exemplar sequence
Representative Public ID C06A5.5 NCBI
Target Description C06A5.5 /REP_DB=WormBase Gene ID /WP=CE07952 /TR=O01475 /GB=AAB52444.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=RNA-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059327(11), NM_059325(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059327 NCBI Caenorhabditis elegans C06A5.5 (C06A5.5) mRNA, complete cds. 11/11 None
NM_059325 NCBI Caenorhabditis elegans Y76G2A.1 (Y76G2A.1) mRNA, complete cds. 11/11 None
Y76G2A.1 ENSEMBL cdna:known chromosome:CEL140:I:5987635:5988271:1 gene:Y76G2A.1 11/11 None
C06A5.5 ENSEMBL cdna:known chromosome:CEL140:I:5989951:5990587:-1 gene:C06A5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063940 2/11 Cross Hyb Matching Probes A 
NM_062114 5/11 Cross Hyb Matching Probes A 
NM_062113 4/11 Cross Hyb Matching Probes A 
NM_058295 1/11 Cross Hyb Matching Probes A 
GENEFINDER00000037998 4/11 Cross Hyb Matching Probes None
GENEFINDER00000016218 1/11 Cross Hyb Matching Probes None
GENEFINDER00000012799 5/11 Cross Hyb Matching Probes None
GENEFINDER00000012795 4/11 Cross Hyb Matching Probes None
SNAP00000037069 5/11 Cross Hyb Matching Probes None
GENEFINDER00000037079 4/11 Cross Hyb Matching Probes None
GENEFINDER00000037080 4/11 Cross Hyb Matching Probes None
GENEFINDER00000037089 5/11 Cross Hyb Matching Probes None
SNAP00000037179 2/11 Cross Hyb Matching Probes None
GENEFINDER00000037199 1/11 Cross Hyb Matching Probes None
Y48G1BL.4 1/11 Cross Hyb Matching Probes A 
F14D2.10 4/11 Cross Hyb Matching Probes A 
F14D2.9 5/11 Cross Hyb Matching Probes A 
F44F4.2.1 2/11 Cross Hyb Matching Probes None
F44F4.2.2 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title RNA-binding protein

Ensembl Y76G2A.1
C06A5.5
Entrez Gene 172271 Entrez gene
172272 Entrez gene
SwissProt O01475 EMBL-EBI
WormBase CE07952 Wormbase
CE07952 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78488 Hypothetical protein Y76G2A.1 [Caenorhabditis elegans] gb|AAB52444.1| Hypothetical protein C06A5.5 [Caenorhabditis elegans] ref|NP_491728.1| C06A5.5 [Caenorhabditis elegans] ref|NP_491726.1| Y76G2A.1 [Caenorhabditis elegans] 1.0E-74
blast CAA85453 Hypothetical protein F44F4.2 [Caenorhabditis elegans] ref|NP_496341.1| F44F4.2 [Caenorhabditis elegans] 2.0E-30
blast CAE73238 Hypothetical protein CBG20647 [Caenorhabditis briggsae] 7.0E-28
Sequence
Target Sequence 
>C. ELEGANS:172795_X_AT
acatcggtcgtttcccaaatagagcatccgatcatgatgccgagcacttcttctgcggat
atgaaaagctgcctgatgccataatgaagaacatatttggtgttggttatcggagcgatg
ctgacgacatcatttttgatgagcagagaagaattttgcttgtggagaaaagctcaatgg
caggttggctccgtgatcggctggtcccttcgatgtctgattgcagttcattgcttcaga
gagcagcggcggagttttatcaaaataagatgagcgatccgctttgcaattgggatcaat
tgaatccggagcatgtctcaatggtggccgctcgaatcgccaagttttccaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCGGTCGTTTCCCAAATAGAGC 485 101 26 Antisense
ATCCGATCATGATGCCGAGCACTTC 690 37 51 Antisense
CGAGCACTTCTTCTGCGGATATGAA 695 249 66 Antisense
GAAAAGCTGCCTGATGCCATAATGA 2 351 88 Antisense
ATTTGGTGTTGGTTATCGGAGCGAT 563 17 120 Antisense
AAGCTCAATGGCAGGTTGGCTCCGT 320 149 195 Antisense
TCCCTTCGATGTCTGATTGCAGTTC 117 599 230 Antisense
GAGAGCAGCGGCGGAGTTTTATCAA 651 393 264 Antisense
TGAGCGATCCGCTTTGCAATTGGGA 567 569 296 Antisense
GAGCATGTCTCAATGGTGGCCGCTC 487 389 334 Antisense
GCTCGAATCGCCAAGTTTTCCAAGA 291 299 355 Antisense
Sequence Source Affymetrix Proprietary Database