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[172790_x_at]

Description F02C12.5A /REP_DB=WormBase Gene ID /WP=CE09177 /TR=O17624 /GB=CAA91023.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 59      6grp_total > 67      4grp_total > 02      6grp_highest_sub > Da      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19076
1 2 3 4 range
A 962.9
(-2.8)
P 		594.2
(-2.9)
P 		440.3
(-3)
P 		17345.1
(3)
P 		16905
B 894.5
(-2.9)
P 		600.1
(-3)
P 		619.5
(-3)
P 		18270.8
(3)
P 		17671
C 1110.6
(-2.8)
P 		592
(-3)
P 		661.5
(-3)
P 		19516.4
(3)
P 		18924
avr 989.3
(-2.9) 		595.4
(-3) 		573.8
(-3) 		18377.4
(3) 		17804

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8358
1 2 3 4 5 6 range
A 2819.1
(-1.9)
P 		1279.8
(-3)
P 		2597.7
(-2.1)
P 		2062.7
(-2.4)
P 		1445.9
(-2.9)
P 		9638
(3)
P 		8358
B 2611.6
(-1.9)
P 		1315
(-3)
P 		2514.6
(-2)
P 		1862.3
(-2.6)
P 		1529.6
(-2.8)
P 		8634.5
(3)
P 		7320
C 2435.7
(-2.1)
P 		1367.7
(-2.9)
P 		2563.4
(-2)
P 		1560.2
(-2.8)
P 		1288.4
(-3)
P 		9093.5
(3)
P 		7805
avr 2622.1
(-2) 		1320.8
(-3) 		2558.6
(-2) 		1828.4
(-2.6) 		1421.3
(-2.9) 		9122
(3) 		7801
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3778
1 2 3 4 range
A 350.6
(-2.4)
P 		129
(-3)
P 		115.1
(-3)
P 		2539
(3)
P 		2424
B 285.3
(-2.8)
P 		148.2
(-3)
P 		143.6
(-3)
P 		3893.5
(3)
P 		3750
C 367.6
(-2.6)
P 		170.2
(-3)
P 		230.6
(-2.9)
P 		3290.8
(3)
P 		3121
avr 334.5
(-2.6) 		149.1
(-3) 		163.1
(-3) 		3241.1
(3) 		3092

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2906
1 2 3 4 5 6 range
A 519.7
(-2.7)
P 		455.2
(-2.9)
P 		565.7
(-2.6)
P 		523.2
(-2.7)
P 		436.3
(-3)
P 		2346.6
(3)
P 		1910
B 908.7
(-2)
P 		437.7
(-3)
P 		610.6
(-2.6)
P 		493.2
(-2.9)
P 		621.4
(-2.6)
P 		3219.8
(3)
P 		2782
C 902.8
(-1.7)
P 		417.3
(-2.8)
P 		652.4
(-2.3)
P 		313.8
(-3)
P 		416.9
(-2.8)
P 		3044.1
(3)
P 		2730
avr 777.1
(-2.2) 		436.7
(-3) 		609.6
(-2.6) 		443.4
(-3) 		491.5
(-2.9) 		2870.2
(3) 		2434
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172790_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17938
Sequence Type Exemplar sequence
Representative Public ID F02C12.5A NCBI
Target Description F02C12.5A /REP_DB=WormBase Gene ID /WP=CE09177 /TR=O17624 /GB=CAA91023.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=cytochrome P450
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077832(11), NM_077831(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077832 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-13B1) (cyp-13B1) mRNA, complete cds. 11/11 A 
NM_077831 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-13B1) (cyp-13B1) mRNA, complete cds. 11/11 A 
F02C12.5c ENSEMBL cdna:known chromosome:CEL140:X:13406608:13409539:-1 gene:F02C12.5 11/11 A 
F02C12.5b ENSEMBL cdna:known chromosome:CEL140:X:13406689:13411231:-1 gene:F02C12.5 11/11 A 
F02C12.5a ENSEMBL cdna:known chromosome:CEL140:X:13406689:13409565:-1 gene:F02C12.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036545 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13406688-13409539(-) 100.0 100.0
Public Domain and Genome References
Ensembl F02C12.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54208 Hypothetical protein F02C12.5c [Caenorhabditis elegans] emb|CAB54200.1| Hypothetical protein F02C12.5c [Caenorhabditis elegans] ref|NP_510233.1| CYtochrome P450 family member (cyp-13B1) [Caenorhabditis elegans] 0.0
blast CAA91023 Hypothetical protein F02C12.5a [Caenorhabditis elegans] emb|CAB07330.1| Hypothetical protein F02C12.5a [Caenorhabditis elegans] ref|NP_510232.1| CYtochrome P450 family member (cyp-13B1) [Caenorhabditis elegans] sp|O17624|C13B1_CAEEL Putative cytochrome P450 cyp-13B1 0.0
blast CAE61451 Hypothetical protein CBG05342 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
p450 CP1B_RAT Animalia; CYP1B1; rat; CP1B_RAT; Rattus sp.; Q64678 1.0E-119
p450 CP1B_RAT Animalia; CYP1B1; rat; CP1B_RAT; Rattus sp.; Q64678 1.0E-123
p450 CP15_CHICK Animalia; CYP1A5; chi; CP15_CHICK; Gallus gallus; P79761 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.6E-85
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.0E-84
Pfam IPR001128 EMBL-EBI Cytochrome P450 4.6E-85
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510233.1 1 2-24
NP_510232.1 1 2-24
F02C12.5c 1 2-24
F02C12.5a 1 2-24
Sequence
Target Sequence 
>C. ELEGANS:172790_X_AT
gcaaactcattggcttacgcatcttatttattggcaaaacacccggagaagatgaaattg
gctcaagaagaagttgataccgttgtgggatctgaaaatgtatcctatgatgatatgaca
aagttgaagtatttagatgcagttgtaagagaatcattaagattgtatccagtcgcttgg
ttcgcctgctcccgggaatgcgtgaagcctaccacacttggtgatatttacattgataag
ggtgtgaaaattgaagcagatgttatgtcacttcatagaagcaaggaaatctggggtgaa
aacgcggatgattttgttccagaaagatggctcgagccttcatcccgacataccatgtct
tggataccgtttggagcaggaccccgtcaatgtgttggaatgcgtttaggactttccgaa
gcaaagactgcattggctcatttgcttcgaagatatgatttagtcgcaggagtagaaact
gaggtacggttaacacttcgttttttttttatatttaagagttctcaaattcagaaagag
ttgaacattcttggttgcacaactacatcgccagaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAACTCATTGGCTTACGCATCTT 41 319 988 Antisense
AGATTGTATCCAGTCGCTTGGTTCG 413 65 1147 Antisense
TGCTCCCGGGAATGCGTGAAGCCTA 648 579 1174 Antisense
GTGAAGCCTACCACACTTGGTGATA 205 481 1189 Antisense
GAAAGATGGCTCGAGCCTTCATCCC 234 361 1309 Antisense
TCATCCCGACATACCATGTCTTGGA 59 623 1327 Antisense
TGGATACCGTTTGGAGCAGGACCCC 653 549 1348 Antisense
GGACCCCGTCAATGTGTTGGAATGC 231 523 1366 Antisense
GAATGCGTTTAGGACTTTCCGAAGC 612 329 1385 Antisense
GACTGCATTGGCTCATTTGCTTCGA 413 375 1413 Antisense
GTTGCACAACTACATCGCCAGAAGC 180 439 1541 Antisense
Sequence Source Affymetrix Proprietary Database