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[172786_x_at] phosphatase

Description F57H12.5 /REP_DB=WormBase Gene ID /WP=CE17126 /TR=O45095 /GB=AAC02601.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=phosphatase
Cluster 6grp_total > 59      4grp_total > 03      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 62.2
(-1.3)
A 		28.6
(-3)
A 		47.5
(-2.1)
A 		150.4
(3)
P 		122
B 52.5
(-1.9)
A 		48.8
(-2.1)
A 		33.8
(-3)
A 		134.3
(3)
P 		101
C 80.8
(-0.5)
P 		81
(-0.5)
A 		55.8
(-3)
A 		115.3
(3)
P 		60
avr 65.2
(-1.7) 		52.8
(-2.5) 		45.7
(-3) 		133.3
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 132.2
(1.5)
P 		49.3
(-1.8)
P 		17.4
(-3)
A 		107.9
(0.5)
A 		91.9
(-0.1)
P 		171.1
(3)
P 		154
B 98.1
(-0.4)
P 		45.1
(-3)
A 		62.1
(-2.2)
A 		72.5
(-1.7)
A 		97.2
(-0.4)
P 		167
(3)
P 		122
C 55.2
(-1)
M 		71.8
(-0.4)
A 		2.5
(-3)
A 		78.6
(-0.1)
A 		56
(-1)
P 		162.3
(3)
P 		160
avr 95.2
(-0.1) 		55.4
(-1.8) 		27.3
(-3) 		86.3
(-0.5) 		81.7
(-0.7) 		166.8
(3) 		140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 22.6
(3)
A 		6.2
(-3)
A 		12.4
(-0.7)
A 		22
(2.8)
P 		16
B 16.8
(-0.4)
A 		12
(-1.8)
A 		7.8
(-3)
A 		28.6
(3)
P 		21
C 26.8
(3)
P 		23.3
(0.2)
A 		19.5
(-2.9)
A 		19.4
(-3)
P 		7
avr 22.1
(2.3) 		13.8
(-2.6) 		13.2
(-3) 		23.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 24.4
(0.3)
P 		17.5
(-0.8)
P 		3.8
(-3)
A 		27.4
(0.7)
A 		27.7
(0.8)
P 		41.7
(3)
P 		38
B 34.1
(-0.6)
P 		15
(-3)
A 		15.1
(-3)
A 		19.2
(-2.5)
A 		39.5
(0.1)
P 		62.3
(3)
P 		47
C 20.5
(-0.8)
M 		21.9
(-0.6)
A 		0.6
(-3)
A 		15.8
(-1.3)
A 		18.1
(-1)
P 		54.3
(3)
P 		54
avr 26.3
(-0.4) 		18.1
(-1.5) 		6.5
(-3) 		20.8
(-1.1) 		28.4
(-0.2) 		52.8
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 172786_x_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8822
Sequence Type Exemplar sequence
Representative Public ID F57H12.5 NCBI
Target Description F57H12.5 /REP_DB=WormBase Gene ID /WP=CE17126 /TR=O45095 /GB=AAC02601.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068930(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068930 NCBI Caenorhabditis elegans F57H12.5 (phosphatase) mRNA, complete cds. 11/11 None
SNAP00000044151 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7967441:7969509:1 11/11 None
GENEFINDER00000044161 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7967441:7973346:1 11/11 None
F57H12.5 ENSEMBL cdna:known chromosome:CEL140:IV:7967441:7969534:1 gene:F57H12.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063830 7/11 Cross Hyb Matching Probes A 
NM_001027863 8/11 Cross Hyb Matching Probes None
SNAP00000023201 7/11 Cross Hyb Matching Probes None
GENEFINDER00000023214 7/11 Cross Hyb Matching Probes None
SNAP00000009364 8/11 Cross Hyb Matching Probes None
GENEFINDER00000009369 8/11 Cross Hyb Matching Probes None
C07E3.4 7/11 Cross Hyb Matching Probes A 
ZK783.5 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10360777-10362821(+) 87.32 96.81
chrIV:7967446-7969515(+) 89.83 100.0
Public Domain and Genome References
Gene Title phosphatase
Ensembl F57H12.5
Entrez Gene 177592 Entrez gene
SwissProt O45095 EMBL-EBI
WormBase CE17126 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC02601 Hypothetical protein F57H12.5 [Caenorhabditis elegans] ref|NP_501331.1| F57H12.5 [Caenorhabditis elegans] 0.0
blast CAA90095 Hypothetical protein C07E3.4 [Caenorhabditis elegans] ref|NP_496231.1| C07E3.4 [Caenorhabditis elegans] 0.0
blast AAC02600 Hypothetical protein F57H12.4 [Caenorhabditis elegans] ref|NP_501332.1| F57H12.4 [Caenorhabditis elegans] 1.0E-175
blast CAE59434 Hypothetical protein CBG02807 [Caenorhabditis briggsae] 1.0E-141
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.4E-53
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 7.2E-53
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 9.8E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000044161 5 638-660,681-703,731-753,784-806,821-843
Sequence
Target Sequence 
>C. ELEGANS:172786_X_AT
ttgtctacttgatggtcccggatgacaagctgaagaacaccacgacttctttgttcaacg
acgagaatggtggctatcagtacactggaaagatgtttatcaacaatcggcgtgccgacg
tttctggagatccaaaggaatatacgattgaagtattgcccgaaggaaattcagattctg
tcatatgccaggttcatcatcatgctccatggaagcatctgcagcaaccaccaaaaactc
ttccgatcatcaaaatgattcaccaatttctttcggagaagcaggtgcaaaacgctggag
tctgcgtggtcagcttgttcggatgcggtcgtgcgtgcagcttcattggtgctctctacg
caatcaaccagctcaataatggaattgagcccaatatttgcgagatcatgaagaatatca
aacagcagcgtccaggaggagtcgaatcttttgctcaatacgccagtatttatgcaattg
tgtttgactacattgcgcgcaaacgtggcggaaagaaggctcccgtaaacaaggacatca
atcgattcattgatgagctcgccgagatctccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTCTACTTGATGGTCCCGGATGA 680 689 1025 Antisense
AACACCACGACTTCTTTGTTCAACG 28 137 1060 Antisense
TGTTTATCAACAATCGGCGTGCCGA 248 561 1118 Antisense
CCAGGTTCATCATCATGCTCCATGG 135 273 1212 Antisense
TGGAAGCATCTGCAGCAACCACCAA 338 547 1234 Antisense
AACCACCAAAAACTCTTCCGATCAT 42 147 1250 Antisense
TCTGCGTGGTCAGCTTGTTCGGATG 459 609 1325 Antisense
TCATTGGTGCTCTCTACGCAATCAA 124 619 1367 Antisense
GTCGAATCTTTTGCTCAATACGCCA 275 475 1465 Antisense
ATACGCCAGTATTTATGCAATTGTG 527 23 1482 Antisense
ATTGATGAGCTCGCCGAGATCTCCC 332 5 1573 Antisense
Sequence Source Affymetrix Proprietary Database